RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SLC4A3P48751 1232 aa8.8□□□□□ -1
UPF2-203ENST00000397053 MINK1Q8N4C8 1332 aaPredicted RBP8.8□□□□□ -1
UPF2-203ENST00000397053 TNIKQ9UKE5 1360 aa8.8□□□□□ -1
UPF2-203ENST00000397053 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.8□□□□□ -1
UPF2-203ENST00000397053 CCDC27Q2M243 656 aa8.8□□□□□ -1
UPF2-203ENST00000397053 NLRP13Q86W25 1043 aa8.8□□□□□ -1
UPF2-203ENST00000397053 NECTIN2Q92692 538 aa8.8□□□□□ -1
UPF2-203ENST00000397053 FOXD4L6Q3SYB3 417 aaPredicted RBP8.79□□□□□ -1
UPF2-203ENST00000397053 FOXD4L3Q6VB84 417 aaPredicted RBP8.79□□□□□ -1
UPF2-203ENST00000397053 ANKRD45Q5TZF3 282 aa8.79□□□□□ -1
UPF2-203ENST00000397053 CCER2I3L3R5 266 aa8.79□□□□□ -1
UPF2-203ENST00000397053 OFD1O75665 1012 aa8.79□□□□□ -1
UPF2-203ENST00000397053 SAFBQ15424 915 aaKnown RBP eCLIP8.79□□□□□ -1
UPF2-203ENST00000397053 RB1CC1Q8TDY2 1594 aa8.79□□□□□ -1
UPF2-203ENST00000397053 FYB1O15117 783 aa8.79□□□□□ -1
UPF2-203ENST00000397053 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.79□□□□□ -1
UPF2-203ENST00000397053 GOLGA6L3A6NEY3 463 aa8.78□□□□□ -1
UPF2-203ENST00000397053 HOOK1Q9UJC3 728 aaKnown RBP8.78□□□□□ -1
UPF2-203ENST00000397053 MTMR7Q9Y216 660 aa8.78□□□□□ -1
UPF2-203ENST00000397053 EVC2Q86UK5 1308 aa8.78□□□□□ -1
UPF2-203ENST00000397053 FKBP5Q13451 457 aaPredicted RBP8.78□□□□□ -1
UPF2-203ENST00000397053 RNF20Q5VTR2 975 aa8.78□□□□□ -1
UPF2-203ENST00000397053 BCL2L13Q9BXK5 485 aa8.78□□□□□ -1
UPF2-203ENST00000397053 RRP12Q5JTH9 1297 aaKnown RBP8.77□□□□□ -1
UPF2-203ENST00000397053 RALYLQ86SE5 291 aaKnown RBP8.77□□□□□ -1
UPF2-203ENST00000397053 TDRD9Q8NDG6 1382 aaKnown RBP8.77□□□□□ -1
UPF2-203ENST00000397053 NEUROD6Q96NK8 337 aa8.77□□□□□ -1.01
UPF2-203ENST00000397053 CGNL1Q0VF96 1302 aa8.77□□□□□ -1.01
UPF2-203ENST00000397053 GPS2Q13227 327 aa8.77□□□□□ -1.01
UPF2-203ENST00000397053 FAM177BA6PVY3 158 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 OSCARQ8IYS5 282 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 PDS5BQ9NTI5 1447 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 WASHC4Q2M389 1173 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 PLIN1O60240 522 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 NAP1L1P55209 391 aaKnown RBP8.76□□□□□ -1.01
UPF2-203ENST00000397053 RIC3Q7Z5B4 369 aa8.76□□□□□ -1.01
UPF2-203ENST00000397053 SETQ01105 290 aaPredicted RBP8.75□□□□□ -1.01
UPF2-203ENST00000397053 JPH4Q96JJ6 628 aa8.75□□□□□ -1.01
UPF2-203ENST00000397053 ANO2Q9NQ90 1003 aa8.75□□□□□ -1.01
UPF2-203ENST00000397053 ZKSCAN2Q63HK3 967 aa8.75□□□□□ -1.01
UPF2-203ENST00000397053 BICD2Q8TD16 824 aa8.75□□□□□ -1.01
UPF2-203ENST00000397053 RDXP35241 583 aaKnown RBP8.75□□□□□ -1.01
UPF2-203ENST00000397053 REC8O95072 547 aa8.75□□□□□ -1.01
UPF2-203ENST00000397053 AIMP1Q12904 312 aaKnown RBP8.75□□□□□ -1.01
UPF2-203ENST00000397053 SETD5Q9C0A6 1442 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 EPS15P42566 896 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 DDX49Q9Y6V7 483 aaKnown RBP8.74□□□□□ -1.01
UPF2-203ENST00000397053 ARHGAP35Q9NRY4 1499 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 FAM69CQ0P6D2 419 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 HSP90AB4PQ58FF6 505 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 CDR1P51861 262 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 BRMS1Q9HCU9 246 aa8.74□□□□□ -1.01
UPF2-203ENST00000397053 API5Q9BZZ5 524 aaKnown RBP8.73□□□□□ -1.01
UPF2-203ENST00000397053 DIAPH1O60610 1272 aaKnown RBP8.73□□□□□ -1.01
UPF2-203ENST00000397053 XBP1P17861 261 aa8.73□□□□□ -1.01
UPF2-203ENST00000397053 CCDC173Q0VFZ6 552 aa8.73□□□□□ -1.01
UPF2-203ENST00000397053 RBM42Q9BTD8 480 aaKnown RBP8.73□□□□□ -1.01
UPF2-203ENST00000397053 L3MBTL2Q969R5 705 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 NUTM2BA6NNL0 878 aaPredicted RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 NUTM2EB1AL46 878 aaPredicted RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 HSP90AB2PQ58FF8 381 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 HOMER1Q86YM7 354 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 NUTM2AQ8IVF1 878 aaPredicted RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 NLRP6P59044 892 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 TBC1D2BQ9UPU7 963 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 VPS37CA5D8V6 355 aaPredicted RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 STRN4Q9NRL3 753 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 TSPYL4Q9UJ04 414 aa8.72□□□□□ -1.01
UPF2-203ENST00000397053 DEKP35659 375 aaKnown RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 PROSER2Q86WR7 435 aaPredicted RBP8.72□□□□□ -1.01
UPF2-203ENST00000397053 ERC2O15083 957 aa8.71□□□□□ -1.01
UPF2-203ENST00000397053 WDHD1O75717 1129 aaPredicted RBP8.71□□□□□ -1.01
UPF2-203ENST00000397053 ATP2B2Q01814 1243 aa8.71□□□□□ -1.01
UPF2-203ENST00000397053 SART3Q15020 963 aaKnown RBP8.71□□□□□ -1.01
UPF2-203ENST00000397053 NUTM2GQ5VZR2 741 aa8.71□□□□□ -1.01
UPF2-203ENST00000397053 VSIG10Q8N0Z9 540 aa8.71□□□□□ -1.01
UPF2-203ENST00000397053 ZNF592Q92610 1267 aa8.71□□□□□ -1.01
UPF2-203ENST00000397053 PANK3Q9H999 370 aa8.71□□□□□ -1.02
UPF2-203ENST00000397053 CCDC73Q6ZRK6 1079 aa8.71□□□□□ -1.02
UPF2-203ENST00000397053 SOGA1O94964 1423 aa8.71□□□□□ -1.02
UPF2-203ENST00000397053 UACAQ9BZF9 1416 aa8.71□□□□□ -1.02
UPF2-203ENST00000397053 PHLDB1Q86UU1 1377 aa8.71□□□□□ -1.02
UPF2-203ENST00000397053 DDX11L8A8MPP1 907 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 RUFY1Q96T51 708 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 FMN1Q68DA7 1419 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 ST20-MTHFSA0A0A6YYL1 179 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 SLC3A2P08195 630 aaKnown RBP8.7□□□□□ -1.02
UPF2-203ENST00000397053 FOSBP53539 338 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 RIPK4P57078 832 aa8.7□□□□□ -1.02
UPF2-203ENST00000397053 ATP2B1P20020 1258 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 PDCL3Q9H2J4 239 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 E9PSI1 815 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 KRT18P05783 430 aaKnown RBP8.69□□□□□ -1.02
UPF2-203ENST00000397053 CCDC144AA2RUR9 1427 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 CDK5RAP3Q96JB5 506 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 SMC3Q9UQE7 1217 aa8.69□□□□□ -1.02
UPF2-203ENST00000397053 GPRASP1Q5JY77 1395 aa8.68□□□□□ -1.02
UPF2-203ENST00000397053 RBM5P52756 815 aaKnown RBP eCLIP8.68□□□□□ -1.02
UPF2-203ENST00000397053 SYCP1Q15431 976 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms