RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 RIMS2Q9UQ26 1411 aa37.19■■■■□ 3.54
TNFRSF4-201ENST00000379236 PIP4K2BP78356 416 aa37.18■■■■□ 3.54
TNFRSF4-201ENST00000379236 HFM1A2PYH4 1435 aa37.16■■■■□ 3.54
TNFRSF4-201ENST00000379236 SLC26A8Q96RN1 970 aa37.15■■■■□ 3.54
TNFRSF4-201ENST00000379236 ZFYVE9O95405 1425 aa37.15■■■■□ 3.54
TNFRSF4-201ENST00000379236 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.12■■■■□ 3.53
TNFRSF4-201ENST00000379236 XIRP1Q702N8 1843 aaKnown RBP37.12■■■■□ 3.53
TNFRSF4-201ENST00000379236 TRIM52Q96A61 297 aa37.11■■■■□ 3.53
TNFRSF4-201ENST00000379236 SENP3Q9H4L4 574 aaPredicted RBP37.11■■■■□ 3.53
TNFRSF4-201ENST00000379236 PLEKHG1Q9ULL1 1385 aa37.1■■■■□ 3.53
TNFRSF4-201ENST00000379236 KCNA6P17658 529 aa37.05■■■■□ 3.52
TNFRSF4-201ENST00000379236 KIF1BO60333 1816 aa37.04■■■■□ 3.52
TNFRSF4-201ENST00000379236 NWD1Q149M9 1564 aa37.03■■■■□ 3.52
TNFRSF4-201ENST00000379236 CHD2O14647 1828 aaKnown RBP37.02■■■■□ 3.52
TNFRSF4-201ENST00000379236 NUTM2DQ5VT03 806 aaPredicted RBP37.02■■■■□ 3.52
TNFRSF4-201ENST00000379236 TRPM2O94759 1503 aa37.01■■■■□ 3.52
TNFRSF4-201ENST00000379236 ALKQ9UM73 1620 aa37■■■■□ 3.51
TNFRSF4-201ENST00000379236 NKTRP30414 1462 aaKnown RBP37■■■■□ 3.51
TNFRSF4-201ENST00000379236 CLTCL1P53675 1640 aa36.99■■■■□ 3.51
TNFRSF4-201ENST00000379236 ZNF326Q5BKZ1 582 aaKnown RBP36.98■■■■□ 3.51
TNFRSF4-201ENST00000379236 DISP3Q9P2K9 1392 aa36.98■■■■□ 3.51
TNFRSF4-201ENST00000379236 DIP2AQ14689 1571 aa36.98■■■■□ 3.51
TNFRSF4-201ENST00000379236 PROSER2Q86WR7 435 aaPredicted RBP36.97■■■■□ 3.51
TNFRSF4-201ENST00000379236 TMEM94Q12767 1356 aa36.95■■■■□ 3.51
TNFRSF4-201ENST00000379236 HSPA1LP34931 641 aa36.94■■■■□ 3.5
TNFRSF4-201ENST00000379236 SLC4A1APQ9BWU0 796 aaKnown RBP36.94■■■■□ 3.5
TNFRSF4-201ENST00000379236 TBX22Q9Y458 520 aa36.91■■■■□ 3.5
TNFRSF4-201ENST00000379236 ADAMTS13Q76LX8 1427 aa36.86■■■■□ 3.49
TNFRSF4-201ENST00000379236 RBM33Q96EV2 1170 aaKnown RBP36.85■■■■□ 3.49
TNFRSF4-201ENST00000379236 MSH6P52701 1360 aa36.82■■■■□ 3.49
TNFRSF4-201ENST00000379236 PIK3R4Q99570 1358 aa36.82■■■■□ 3.49
TNFRSF4-201ENST00000379236 NEXMIFQ5QGS0 1516 aa36.8■■■■□ 3.48
TNFRSF4-201ENST00000379236 SETBP1Q9Y6X0 1596 aa36.79■■■■□ 3.48
TNFRSF4-201ENST00000379236 NRXN3Q9Y4C0 1643 aa36.79■■■■□ 3.48
TNFRSF4-201ENST00000379236 C14orf37Q86TY3 774 aa36.75■■■■□ 3.47
TNFRSF4-201ENST00000379236 ACIN1Q9UKV3 1341 aaKnown RBP36.73■■■■□ 3.47
TNFRSF4-201ENST00000379236 ROBO1Q9Y6N7 1651 aa36.73■■■■□ 3.47
TNFRSF4-201ENST00000379236 SETD5Q9C0A6 1442 aa36.7■■■■□ 3.47
TNFRSF4-201ENST00000379236 FOXD1Q16676 465 aa36.7■■■■□ 3.47
TNFRSF4-201ENST00000379236 NCOA3Q9Y6Q9 1424 aa36.69■■■■□ 3.46
TNFRSF4-201ENST00000379236 AMOTL2Q9Y2J4 779 aa36.69■■■■□ 3.46
TNFRSF4-201ENST00000379236 MED1Q15648 1581 aaPredicted RBP36.69■■■■□ 3.46
TNFRSF4-201ENST00000379236 FAM135BQ49AJ0 1406 aa36.68■■■■□ 3.46
TNFRSF4-201ENST00000379236 PPLO60437 1756 aa36.68■■■■□ 3.46
TNFRSF4-201ENST00000379236 MPHOSPH9Q99550 1183 aa36.68■■■■□ 3.46
TNFRSF4-201ENST00000379236 XRN1Q8IZH2 1706 aaKnown RBP36.67■■■■□ 3.46
TNFRSF4-201ENST00000379236 CCDC144AA2RUR9 1427 aa36.67■■■■□ 3.46
TNFRSF4-201ENST00000379236 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.65■■■■□ 3.46
TNFRSF4-201ENST00000379236 VGFO15240 615 aaPredicted RBP36.64■■■■□ 3.46
TNFRSF4-201ENST00000379236 PTPRUQ92729 1446 aa36.64■■■■□ 3.46
TNFRSF4-201ENST00000379236 RPGRIP1LQ68CZ1 1315 aa36.63■■■■□ 3.45
TNFRSF4-201ENST00000379236 SLAIN2Q9P270 581 aa36.59■■■■□ 3.45
TNFRSF4-201ENST00000379236 METP08581 1390 aa36.58■■■■□ 3.45
TNFRSF4-201ENST00000379236 ATF3P18847 181 aa36.57■■■■□ 3.44
TNFRSF4-201ENST00000379236 C19orf44Q9H6X5 657 aa36.56■■■■□ 3.44
TNFRSF4-201ENST00000379236 PHLPP1O60346 1717 aa36.56■■■■□ 3.44
TNFRSF4-201ENST00000379236 RAB3GAP2Q9H2M9 1393 aa36.55■■■■□ 3.44
TNFRSF4-201ENST00000379236 CADPS2Q86UW7 1296 aa36.55■■■■□ 3.44
TNFRSF4-201ENST00000379236 SETD1AO15047 1707 aaKnown RBP36.54■■■■□ 3.44
TNFRSF4-201ENST00000379236 ILDR2Q71H61 639 aa36.54■■■■□ 3.44
TNFRSF4-201ENST00000379236 IFT172Q9UG01 1749 aa36.51■■■■□ 3.44
TNFRSF4-201ENST00000379236 PHF23Q9BUL5 403 aaPredicted RBP36.51■■■■□ 3.44
TNFRSF4-201ENST00000379236 RGL3Q3MIN7 710 aa36.49■■■■□ 3.43
TNFRSF4-201ENST00000379236 DCCP43146 1447 aa36.45■■■■□ 3.43
TNFRSF4-201ENST00000379236 SPATA31E1Q6ZUB1 1445 aa36.44■■■■□ 3.42
TNFRSF4-201ENST00000379236 NALCNQ8IZF0 1738 aa36.43■■■■□ 3.42
TNFRSF4-201ENST00000379236 ANKRD30BQ9BXX2 1392 aa36.4■■■■□ 3.42
TNFRSF4-201ENST00000379236 PTCH1Q13635 1447 aa36.38■■■■□ 3.41
TNFRSF4-201ENST00000379236 ADGRL3Q9HAR2 1447 aa36.38■■■■□ 3.41
TNFRSF4-201ENST00000379236 ADGRF5Q8IZF2 1346 aa36.35■■■■□ 3.41
TNFRSF4-201ENST00000379236 COL16A1Q07092 1604 aaPredicted RBP36.35■■■■□ 3.41
TNFRSF4-201ENST00000379236 AHDC1Q5TGY3 1603 aaPredicted RBP36.33■■■■□ 3.41
TNFRSF4-201ENST00000379236 ROBO2Q9HCK4 1378 aa36.29■■■■□ 3.4
TNFRSF4-201ENST00000379236 JCADQ9P266 1359 aa36.29■■■■□ 3.4
TNFRSF4-201ENST00000379236 MST1RQ04912 1400 aa36.29■■■■□ 3.4
TNFRSF4-201ENST00000379236 SOCS7O14512 581 aa36.29■■■■□ 3.4
TNFRSF4-201ENST00000379236 PRAG1Q86YV5 1406 aa36.28■■■■□ 3.4
TNFRSF4-201ENST00000379236 ASXL1Q8IXJ9 1541 aa36.27■■■■□ 3.4
TNFRSF4-201ENST00000379236 BRINP3Q76B58 766 aa36.26■■■■□ 3.4
TNFRSF4-201ENST00000379236 PIK3C2GO75747 1445 aa36.25■■■■□ 3.39
TNFRSF4-201ENST00000379236 HRCP23327 699 aa36.25■■■■□ 3.39
TNFRSF4-201ENST00000379236 KNDC1Q76NI1 1749 aa36.24■■■■□ 3.39
TNFRSF4-201ENST00000379236 LAMC1P11047 1609 aa36.23■■■■□ 3.39
TNFRSF4-201ENST00000379236 NHSL1Q5SYE7 1610 aa36.23■■■■□ 3.39
TNFRSF4-201ENST00000379236 SHPRHQ149N8 1683 aa36.21■■■■□ 3.39
TNFRSF4-201ENST00000379236 MYOM2P54296 1465 aa36.2■■■■□ 3.39
TNFRSF4-201ENST00000379236 STK26Q9P289 416 aa36.2■■■■□ 3.39
TNFRSF4-201ENST00000379236 LRPPRCP42704 1394 aaKnown RBP36.16■■■■□ 3.38
TNFRSF4-201ENST00000379236 C1orf167Q5SNV9 1468 aa36.14■■■■□ 3.38
TNFRSF4-201ENST00000379236 TMEM132EQ6IEE7 984 aa36.14■■■■□ 3.38
TNFRSF4-201ENST00000379236 TECPR2O15040 1411 aa36.13■■■■□ 3.37
TNFRSF4-201ENST00000379236 NRXN1Q9ULB1 1477 aa36.12■■■■□ 3.37
TNFRSF4-201ENST00000379236 SPATA31A6Q5VVP1 1343 aa36.12■■■■□ 3.37
TNFRSF4-201ENST00000379236 CDC42BPGQ6DT37 1551 aa36.12■■■■□ 3.37
TNFRSF4-201ENST00000379236 YTHDC2Q9H6S0 1430 aaKnown RBP36.1■■■■□ 3.37
TNFRSF4-201ENST00000379236 ABCC11Q96J66 1382 aa36.09■■■■□ 3.37
TNFRSF4-201ENST00000379236 MEX3CQ5U5Q3 659 aaKnown RBP36.08■■■■□ 3.37
TNFRSF4-201ENST00000379236 C14orf93Q9H972 538 aaKnown RBP36.08■■■■□ 3.37
TNFRSF4-201ENST00000379236 DHX57Q6P158 1386 aaKnown RBP36.06■■■■□ 3.36
TNFRSF4-201ENST00000379236 CFAP70Q5T0N1 1121 aa36.05■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms