RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MAGI2Q86UL8 1455 aa24.13■■□□□ 1.45
CCDC3-201ENST00000378825 FRAT2O75474 233 aaPredicted RBP24.12■■□□□ 1.45
CCDC3-201ENST00000378825 FAM161AQ3B820 660 aa24.12■■□□□ 1.45
CCDC3-201ENST00000378825 MAST1Q9Y2H9 1570 aa24.12■■□□□ 1.45
CCDC3-201ENST00000378825 DAXXQ9UER7 740 aaPredicted RBP24.12■■□□□ 1.45
CCDC3-201ENST00000378825 UNC13BO14795 1591 aa24.11■■□□□ 1.45
CCDC3-201ENST00000378825 ZCCHC11Q5TAX3 1644 aaKnown RBP24.11■■□□□ 1.45
CCDC3-201ENST00000378825 WDR43Q15061 677 aaKnown RBP eCLIP24.11■■□□□ 1.45
CCDC3-201ENST00000378825 ZNF521Q96K83 1311 aa24.08■■□□□ 1.45
CCDC3-201ENST00000378825 GOLGA2Q08379 1002 aa24.08■■□□□ 1.44
CCDC3-201ENST00000378825 DUOX2Q9NRD8 1548 aa24.07■■□□□ 1.44
CCDC3-201ENST00000378825 BCAR3O75815 825 aa24.07■■□□□ 1.44
CCDC3-201ENST00000378825 KNSTRNQ9Y448 316 aa24.07■■□□□ 1.44
CCDC3-201ENST00000378825 SPAG9O60271 1321 aaKnown RBP24.07■■□□□ 1.44
CCDC3-201ENST00000378825 PLXNC1O60486 1568 aa24.06■■□□□ 1.44
CCDC3-201ENST00000378825 AMER1Q5JTC6 1135 aaPredicted RBP24.06■■□□□ 1.44
CCDC3-201ENST00000378825 WDR7Q9Y4E6 1490 aa24.06■■□□□ 1.44
CCDC3-201ENST00000378825 DMRT2Q9Y5R5 561 aa24.05■■□□□ 1.44
CCDC3-201ENST00000378825 INSRP06213 1382 aa24.05■■□□□ 1.44
CCDC3-201ENST00000378825 IQGAP3Q86VI3 1631 aa24.05■■□□□ 1.44
CCDC3-201ENST00000378825 CLASP1Q7Z460 1538 aa24.03■■□□□ 1.44
CCDC3-201ENST00000378825 SLFN5Q08AF3 891 aa24.03■■□□□ 1.44
CCDC3-201ENST00000378825 APAF1O14727 1248 aa24.02■■□□□ 1.44
CCDC3-201ENST00000378825 IGHDP01880 384 aa24.01■■□□□ 1.43
CCDC3-201ENST00000378825 ABCC1P33527 1531 aa24.01■■□□□ 1.43
CCDC3-201ENST00000378825 SEC24BO95487 1268 aa23.99■■□□□ 1.43
CCDC3-201ENST00000378825 LAMC1P11047 1609 aa23.97■■□□□ 1.43
CCDC3-201ENST00000378825 UHRF1BP1LA0JNW5 1464 aa23.97■■□□□ 1.43
CCDC3-201ENST00000378825 USP19O94966 1318 aa23.95■■□□□ 1.42
CCDC3-201ENST00000378825 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.95■■□□□ 1.42
CCDC3-201ENST00000378825 TRMT2AQ8IZ69 625 aaKnown RBP23.93■■□□□ 1.42
CCDC3-201ENST00000378825 KIF3BO15066 747 aa23.92■■□□□ 1.42
CCDC3-201ENST00000378825 ATP10AO60312 1499 aa23.92■■□□□ 1.42
CCDC3-201ENST00000378825 EIF2AK4Q9P2K8 1649 aaKnown RBP23.91■■□□□ 1.42
CCDC3-201ENST00000378825 PANK1Q8TE04 598 aa23.91■■□□□ 1.42
CCDC3-201ENST00000378825 COG6Q9Y2V7 657 aa23.89■■□□□ 1.42
CCDC3-201ENST00000378825 SCAPERQ9BY12 1400 aa23.89■■□□□ 1.41
CCDC3-201ENST00000378825 POGKQ9P215 609 aa23.89■■□□□ 1.41
CCDC3-201ENST00000378825 RNF17Q9BXT8 1623 aaKnown RBP23.88■■□□□ 1.41
CCDC3-201ENST00000378825 SLKQ9H2G2 1235 aaPredicted RBP23.88■■□□□ 1.41
CCDC3-201ENST00000378825 ZFYVE16Q7Z3T8 1539 aa23.88■■□□□ 1.41
CCDC3-201ENST00000378825 NKTRP30414 1462 aaKnown RBP23.87■■□□□ 1.41
CCDC3-201ENST00000378825 FANCAO15360 1455 aa23.87■■□□□ 1.41
CCDC3-201ENST00000378825 EIF3AQ14152 1382 aaKnown RBP23.86■■□□□ 1.41
CCDC3-201ENST00000378825 ASXL1Q8IXJ9 1541 aa23.85■■□□□ 1.41
CCDC3-201ENST00000378825 TNNQ9UQP3 1299 aa23.85■■□□□ 1.41
CCDC3-201ENST00000378825 EIF5BO60841 1220 aaKnown RBP23.84■■□□□ 1.41
CCDC3-201ENST00000378825 NEUROD2Q15784 382 aa23.83■■□□□ 1.41
CCDC3-201ENST00000378825 PIK3C2GO75747 1445 aa23.83■■□□□ 1.41
CCDC3-201ENST00000378825 RTEL1-TNFRSF6BF6WH68 1400 aa23.82■■□□□ 1.4
CCDC3-201ENST00000378825 MADDQ8WXG6 1647 aa23.81■■□□□ 1.4
CCDC3-201ENST00000378825 CARD14Q9BXL6 1004 aa23.81■■□□□ 1.4
CCDC3-201ENST00000378825 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
CCDC3-201ENST00000378825 IQGAP1P46940 1657 aa23.81■■□□□ 1.4
CCDC3-201ENST00000378825 ADGRL1O94910 1474 aa23.8■■□□□ 1.4
CCDC3-201ENST00000378825 E9PSI1 815 aa23.8■■□□□ 1.4
CCDC3-201ENST00000378825 MYOM1P52179 1685 aa23.79■■□□□ 1.4
CCDC3-201ENST00000378825 CANXP27824 592 aaKnown RBP23.79■■□□□ 1.4
CCDC3-201ENST00000378825 CLUAP1Q96AJ1 413 aa23.79■■□□□ 1.4
CCDC3-201ENST00000378825 SYNMO15061 1565 aa23.79■■□□□ 1.4
CCDC3-201ENST00000378825 ATP7AQ04656 1500 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 ARXQ96QS3 562 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 BCL2L13Q9BXK5 485 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 CLTCL1P53675 1640 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 KANK1Q14678 1352 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 TNNT2P45379 298 aaPredicted RBP23.78■■□□□ 1.4
CCDC3-201ENST00000378825 TRPM2O94759 1503 aa23.78■■□□□ 1.4
CCDC3-201ENST00000378825 SCAF11Q99590 1463 aaKnown RBP23.77■■□□□ 1.4
CCDC3-201ENST00000378825 UGGT1Q9NYU2 1555 aa23.77■■□□□ 1.4
CCDC3-201ENST00000378825 CFAP70Q5T0N1 1121 aa23.76■■□□□ 1.39
CCDC3-201ENST00000378825 CENPJQ9HC77 1338 aaPredicted RBP23.76■■□□□ 1.39
CCDC3-201ENST00000378825 ASXL2Q76L83 1435 aa23.76■■□□□ 1.39
CCDC3-201ENST00000378825 PTPRTO14522 1441 aa23.76■■□□□ 1.39
CCDC3-201ENST00000378825 RLBP1P12271 317 aa23.75■■□□□ 1.39
CCDC3-201ENST00000378825 WWC1Q8IX03 1113 aa23.75■■□□□ 1.39
CCDC3-201ENST00000378825 CDCA8Q53HL2 280 aa23.75■■□□□ 1.39
CCDC3-201ENST00000378825 SPRYD3Q8NCJ5 442 aa23.74■■□□□ 1.39
CCDC3-201ENST00000378825 PCDHB15Q9Y5E8 787 aa23.74■■□□□ 1.39
CCDC3-201ENST00000378825 NLRP1Q9C000 1473 aa23.74■■□□□ 1.39
CCDC3-201ENST00000378825 SPHKAPQ2M3C7 1700 aa23.73■■□□□ 1.39
CCDC3-201ENST00000378825 ADGRF5Q8IZF2 1346 aa23.73■■□□□ 1.39
CCDC3-201ENST00000378825 CHGAP10645 457 aaKnown RBP23.73■■□□□ 1.39
CCDC3-201ENST00000378825 ARAP3Q8WWN8 1544 aa23.73■■□□□ 1.39
CCDC3-201ENST00000378825 CGNL1Q0VF96 1302 aa23.72■■□□□ 1.39
CCDC3-201ENST00000378825 VIRMAQ69YN4 1812 aaKnown RBP23.72■■□□□ 1.39
CCDC3-201ENST00000378825 ABCA9Q8IUA7 1624 aa23.71■■□□□ 1.39
CCDC3-201ENST00000378825 PDE3AQ14432 1141 aa23.71■■□□□ 1.39
CCDC3-201ENST00000378825 INO80Q9ULG1 1556 aaPredicted RBP23.7■■□□□ 1.38
CCDC3-201ENST00000378825 DEPDC5O75140 1603 aa23.69■■□□□ 1.38
CCDC3-201ENST00000378825 ANTXR1Q9H6X2 564 aa23.68■■□□□ 1.38
CCDC3-201ENST00000378825 CEP152O94986 1710 aa23.68■■□□□ 1.38
CCDC3-201ENST00000378825 TET3O43151 1660 aa23.68■■□□□ 1.38
CCDC3-201ENST00000378825 NPC1L1Q9UHC9 1359 aa23.67■■□□□ 1.38
CCDC3-201ENST00000378825 MAPK8IP3Q9UPT6 1336 aa23.67■■□□□ 1.38
CCDC3-201ENST00000378825 GGT6Q6P531 493 aa23.67■■□□□ 1.38
CCDC3-201ENST00000378825 RARSP54136 660 aaKnown RBP23.66■■□□□ 1.38
CCDC3-201ENST00000378825 TBC1D2Q9BYX2 928 aa23.66■■□□□ 1.38
CCDC3-201ENST00000378825 PDZRN3Q9UPQ7 1066 aa23.66■■□□□ 1.38
CCDC3-201ENST00000378825 ERVK-7P63135 1459 aa23.65■■□□□ 1.38
CCDC3-201ENST00000378825 FAM43AQ8N2R8 423 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms