RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 CENPHQ9H3R5 247 aa18.45■□□□□ 0.54
COL5A1-201ENST00000371817 CAVIN1Q6NZI2 390 aaKnown RBP18.44■□□□□ 0.54
COL5A1-201ENST00000371817 HSP90AB2PQ58FF8 381 aa18.44■□□□□ 0.54
COL5A1-201ENST00000371817 SLC4A10Q6U841 1118 aa18.44■□□□□ 0.54
COL5A1-201ENST00000371817 PDILTQ8N807 584 aa18.44■□□□□ 0.54
COL5A1-201ENST00000371817 TOMM22Q9NS69 142 aa18.44■□□□□ 0.54
COL5A1-201ENST00000371817 CFDP1Q9UEE9 299 aaPredicted RBP18.44■□□□□ 0.54
COL5A1-201ENST00000371817 ZKSCAN1P17029 563 aaPredicted RBP18.44■□□□□ 0.54
COL5A1-201ENST00000371817 CALCOCO1Q9P1Z2 691 aa18.43■□□□□ 0.54
COL5A1-201ENST00000371817 FBXW7Q969H0 707 aa18.43■□□□□ 0.54
COL5A1-201ENST00000371817 ERLIN2O94905 339 aa18.43■□□□□ 0.54
COL5A1-201ENST00000371817 DHX8Q14562 1220 aaKnown RBP18.42■□□□□ 0.54
COL5A1-201ENST00000371817 ROCK2O75116 1388 aaKnown RBP18.42■□□□□ 0.54
COL5A1-201ENST00000371817 RUFY2Q8WXA3 655 aa18.42■□□□□ 0.54
COL5A1-201ENST00000371817 SETD5Q9C0A6 1442 aa18.42■□□□□ 0.54
COL5A1-201ENST00000371817 SYNE3Q6ZMZ3 975 aa18.42■□□□□ 0.54
COL5A1-201ENST00000371817 RNF214Q8ND24 703 aa18.42■□□□□ 0.54
COL5A1-201ENST00000371817 CCDC112Q8NEF3 446 aa18.42■□□□□ 0.54
COL5A1-201ENST00000371817 ERLIN1O75477 346 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 PDCL2Q8N4E4 241 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 MBD3O95983 291 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 DDX11Q96FC9 970 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 TSPY26PQ9H489 355 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 GPATCH11Q8N954 259 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 EIF3AQ14152 1382 aaKnown RBP18.41■□□□□ 0.54
COL5A1-201ENST00000371817 NLRP13Q86W25 1043 aa18.41■□□□□ 0.54
COL5A1-201ENST00000371817 SMC3Q9UQE7 1217 aa18.4■□□□□ 0.54
COL5A1-201ENST00000371817 TTLL5Q6EMB2 1281 aa18.4■□□□□ 0.54
COL5A1-201ENST00000371817 EPS15P42566 896 aa18.4■□□□□ 0.54
COL5A1-201ENST00000371817 RSPH4AQ5TD94 716 aa18.4■□□□□ 0.54
COL5A1-201ENST00000371817 CEP164Q9UPV0 1460 aa18.4■□□□□ 0.54
COL5A1-201ENST00000371817 LRRFIP1Q32MZ4 808 aaKnown RBP18.4■□□□□ 0.54
COL5A1-201ENST00000371817 ENOX2Q16206 610 aaKnown RBP18.39■□□□□ 0.53
COL5A1-201ENST00000371817 SMARCE1Q969G3 411 aa18.39■□□□□ 0.53
COL5A1-201ENST00000371817 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.39■□□□□ 0.53
COL5A1-201ENST00000371817 VPS37CA5D8V6 355 aaPredicted RBP18.39■□□□□ 0.53
COL5A1-201ENST00000371817 SOX12O15370 315 aa18.38■□□□□ 0.53
COL5A1-201ENST00000371817 CRBNQ96SW2 442 aa18.38■□□□□ 0.53
COL5A1-201ENST00000371817 PLEKHD1A6NEE1 506 aa18.38■□□□□ 0.53
COL5A1-201ENST00000371817 SEPT7Q16181 437 aaKnown RBP18.37■□□□□ 0.53
COL5A1-201ENST00000371817 PDCL3Q9H2J4 239 aa18.37■□□□□ 0.53
COL5A1-201ENST00000371817 CPLX1O14810 134 aa18.37■□□□□ 0.53
COL5A1-201ENST00000371817 OFD1O75665 1012 aa18.37■□□□□ 0.53
COL5A1-201ENST00000371817 C22orf23Q9BZE7 217 aa18.37■□□□□ 0.53
COL5A1-201ENST00000371817 LRRCC1Q9C099 1032 aa18.36■□□□□ 0.53
COL5A1-201ENST00000371817 RNF20Q5VTR2 975 aa18.36■□□□□ 0.53
COL5A1-201ENST00000371817 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.36■□□□□ 0.53
COL5A1-201ENST00000371817 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.36■□□□□ 0.53
COL5A1-201ENST00000371817 TNIKQ9UKE5 1360 aa18.36■□□□□ 0.53
COL5A1-201ENST00000371817 LMOD3Q0VAK6 560 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 SMC2O95347 1197 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 HDGFL2Q7Z4V5 671 aaPredicted RBP18.35■□□□□ 0.53
COL5A1-201ENST00000371817 EXOC6Q8TAG9 804 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 RABEP1Q15276 862 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 ANO2Q9NQ90 1003 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 TCEAL9Q9UHQ7 104 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 ESPNB1AK53 854 aa18.35■□□□□ 0.53
COL5A1-201ENST00000371817 KIF15Q9NS87 1388 aa18.34■□□□□ 0.53
COL5A1-201ENST00000371817 CGNQ9P2M7 1197 aaKnown RBP18.34■□□□□ 0.53
COL5A1-201ENST00000371817 SPC24Q8NBT2 197 aa18.34■□□□□ 0.53
COL5A1-201ENST00000371817 ANKRD18AQ8IVF6 992 aa18.34■□□□□ 0.53
COL5A1-201ENST00000371817 CCDC146Q8IYE0 955 aa18.34■□□□□ 0.53
COL5A1-201ENST00000371817 SDF4Q9BRK5 362 aa18.34■□□□□ 0.53
COL5A1-201ENST00000371817 INTS3Q68E01 1043 aaKnown RBP18.33■□□□□ 0.53
COL5A1-201ENST00000371817 FAM107BQ9H098 131 aa18.33■□□□□ 0.53
COL5A1-201ENST00000371817 PLIN1O60240 522 aa18.33■□□□□ 0.52
COL5A1-201ENST00000371817 KIF7Q2M1P5 1343 aa18.33■□□□□ 0.52
COL5A1-201ENST00000371817 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.33■□□□□ 0.52
COL5A1-201ENST00000371817 IQCEQ6IPM2 695 aa18.32■□□□□ 0.52
COL5A1-201ENST00000371817 DHX37Q8IY37 1157 aaKnown RBP18.32■□□□□ 0.52
COL5A1-201ENST00000371817 PRDM10Q9NQV6 1147 aa18.32■□□□□ 0.52
COL5A1-201ENST00000371817 GRPEL1Q9HAV7 217 aa18.32■□□□□ 0.52
COL5A1-201ENST00000371817 ZMYND15Q9H091 742 aa18.32■□□□□ 0.52
COL5A1-201ENST00000371817 TMX4Q9H1E5 349 aaPredicted RBP18.31■□□□□ 0.52
COL5A1-201ENST00000371817 KINO60870 393 aaKnown RBP18.31■□□□□ 0.52
COL5A1-201ENST00000371817 EZRP15311 586 aaKnown RBP18.31■□□□□ 0.52
COL5A1-201ENST00000371817 KANK1Q14678 1352 aa18.31■□□□□ 0.52
COL5A1-201ENST00000371817 ZKSCAN2Q63HK3 967 aa18.31■□□□□ 0.52
COL5A1-201ENST00000371817 RBM25P49756 843 aaKnown RBP18.3■□□□□ 0.52
COL5A1-201ENST00000371817 IPO4Q8TEX9 1081 aaKnown RBP18.3■□□□□ 0.52
COL5A1-201ENST00000371817 ZFYVE27Q5T4F4 411 aa18.3■□□□□ 0.52
COL5A1-201ENST00000371817 FHAD1B1AJZ9 1412 aa18.3■□□□□ 0.52
COL5A1-201ENST00000371817 TICAM2Q86XR7 235 aa18.3■□□□□ 0.52
COL5A1-201ENST00000371817 SHTN1A0MZ66 631 aa18.29■□□□□ 0.52
COL5A1-201ENST00000371817 E9PSI1 815 aa18.29■□□□□ 0.52
COL5A1-201ENST00000371817 FILIP1LQ4L180 1135 aa18.29■□□□□ 0.52
COL5A1-201ENST00000371817 FRAT2O75474 233 aaPredicted RBP18.29■□□□□ 0.52
COL5A1-201ENST00000371817 ZNF330Q9Y3S2 320 aaPredicted RBP18.29■□□□□ 0.52
COL5A1-201ENST00000371817 SAFBQ15424 915 aaKnown RBP eCLIP18.28■□□□□ 0.52
COL5A1-201ENST00000371817 CCDC102AQ96A19 550 aa18.28■□□□□ 0.52
COL5A1-201ENST00000371817 DDX19BQ9UMR2 479 aa18.28■□□□□ 0.52
COL5A1-201ENST00000371817 CBX1P83916 185 aa18.28■□□□□ 0.52
COL5A1-201ENST00000371817 NF2P35240 595 aa18.28■□□□□ 0.52
COL5A1-201ENST00000371817 IRX3P78415 501 aaPredicted RBP18.27■□□□□ 0.52
COL5A1-201ENST00000371817 MYBBP1AQ9BQG0 1328 aaKnown RBP18.27■□□□□ 0.52
COL5A1-201ENST00000371817 KCNH8Q96L42 1107 aa18.27■□□□□ 0.52
COL5A1-201ENST00000371817 ROCK1Q13464 1354 aa18.27■□□□□ 0.52
COL5A1-201ENST00000371817 SLC26A8Q96RN1 970 aa18.27■□□□□ 0.51
COL5A1-201ENST00000371817 ARHGAP35Q9NRY4 1499 aa18.26■□□□□ 0.51
COL5A1-201ENST00000371817 GOLGA6L10A0A0M3HER8 536 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms