RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ADAMTSL3P82987 1691 aa26.33■■□□□ 1.81
CLN3-206ENST00000360019 GPRASP1Q5JY77 1395 aa26.31■■□□□ 1.8
CLN3-206ENST00000360019 NBPF1Q3BBV0 1214 aa26.31■■□□□ 1.8
CLN3-206ENST00000360019 CARD11Q9BXL7 1154 aa26.31■■□□□ 1.8
CLN3-206ENST00000360019 A2ML1A8K2U0 1454 aa26.29■■□□□ 1.8
CLN3-206ENST00000360019 RIMS1Q86UR5 1692 aaKnown RBP26.29■■□□□ 1.8
CLN3-206ENST00000360019 USP47Q96K76 1375 aa26.28■■□□□ 1.8
CLN3-206ENST00000360019 STAG3Q9UJ98 1225 aa26.27■■□□□ 1.8
CLN3-206ENST00000360019 LAMC1P11047 1609 aa26.26■■□□□ 1.79
CLN3-206ENST00000360019 PIK3C2GO75747 1445 aa26.25■■□□□ 1.79
CLN3-206ENST00000360019 KIAA1210Q9ULL0 1709 aa26.25■■□□□ 1.79
CLN3-206ENST00000360019 PLPPR3Q6T4P5 718 aa26.24■■□□□ 1.79
CLN3-206ENST00000360019 NUTM2DQ5VT03 806 aaPredicted RBP26.23■■□□□ 1.79
CLN3-206ENST00000360019 ZFYVE9O95405 1425 aa26.23■■□□□ 1.79
CLN3-206ENST00000360019 NLRP1Q9C000 1473 aa26.23■■□□□ 1.79
CLN3-206ENST00000360019 VGFO15240 615 aaPredicted RBP26.21■■□□□ 1.79
CLN3-206ENST00000360019 KDM5AP29375 1690 aaKnown RBP26.21■■□□□ 1.79
CLN3-206ENST00000360019 CFAP70Q5T0N1 1121 aa26.21■■□□□ 1.79
CLN3-206ENST00000360019 DIEXFQ68CQ4 756 aaKnown RBP26.2■■□□□ 1.78
CLN3-206ENST00000360019 UBR1Q8IWV7 1749 aa26.2■■□□□ 1.78
CLN3-206ENST00000360019 RIMS2Q9UQ26 1411 aa26.17■■□□□ 1.78
CLN3-206ENST00000360019 C14orf93Q9H972 538 aaKnown RBP26.15■■□□□ 1.78
CLN3-206ENST00000360019 MYO3AQ8NEV4 1616 aa26.14■■□□□ 1.78
CLN3-206ENST00000360019 ST20-MTHFSA0A0A6YYL1 179 aa26.14■■□□□ 1.77
CLN3-206ENST00000360019 IQGAP1P46940 1657 aa26.13■■□□□ 1.77
CLN3-206ENST00000360019 SETBP1Q9Y6X0 1596 aa26.12■■□□□ 1.77
CLN3-206ENST00000360019 C11orf95C9JLR9 678 aaPredicted RBP26.11■■□□□ 1.77
CLN3-206ENST00000360019 SCAF11Q99590 1463 aaKnown RBP26.11■■□□□ 1.77
CLN3-206ENST00000360019 WASHC2AQ641Q2 1341 aa26.11■■□□□ 1.77
CLN3-206ENST00000360019 TMEM2Q9UHN6 1383 aa26.11■■□□□ 1.77
CLN3-206ENST00000360019 ADGRB1O14514 1584 aa26.11■■□□□ 1.77
CLN3-206ENST00000360019 PTPRMP28827 1452 aa26.09■■□□□ 1.77
CLN3-206ENST00000360019 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLN3-206ENST00000360019 SENP3Q9H4L4 574 aaPredicted RBP26.06■■□□□ 1.76
CLN3-206ENST00000360019 CCDC7Q96M83 1385 aa26.06■■□□□ 1.76
CLN3-206ENST00000360019 CEP170BQ9Y4F5 1589 aaPredicted RBP26.06■■□□□ 1.76
CLN3-206ENST00000360019 DDX10Q13206 875 aaKnown RBP26.04■■□□□ 1.76
CLN3-206ENST00000360019 POLR1AO95602 1720 aaPredicted RBP26.04■■□□□ 1.76
CLN3-206ENST00000360019 TMEM132EQ6IEE7 984 aa26.04■■□□□ 1.76
CLN3-206ENST00000360019 ASXL1Q8IXJ9 1541 aa26.03■■□□□ 1.76
CLN3-206ENST00000360019 KIF7Q2M1P5 1343 aa26.03■■□□□ 1.76
CLN3-206ENST00000360019 ARHGAP23Q9P227 1491 aa26.03■■□□□ 1.76
CLN3-206ENST00000360019 SLIT1O75093 1534 aa26.03■■□□□ 1.76
CLN3-206ENST00000360019 TESK2Q96S53 571 aa26.02■■□□□ 1.76
CLN3-206ENST00000360019 ALKQ9UM73 1620 aa26.02■■□□□ 1.76
CLN3-206ENST00000360019 HDGFP51858 240 aaKnown RBP26.01■■□□□ 1.75
CLN3-206ENST00000360019 SETD1BQ9UPS6 1966 aaKnown RBP26.01■■□□□ 1.75
CLN3-206ENST00000360019 NRXN3Q9Y4C0 1643 aa26■■□□□ 1.75
CLN3-206ENST00000360019 ZNF142P52746 1687 aaPredicted RBP26■■□□□ 1.75
CLN3-206ENST00000360019 EIF3AQ14152 1382 aaKnown RBP26■■□□□ 1.75
CLN3-206ENST00000360019 LTKP29376 864 aa25.99■■□□□ 1.75
CLN3-206ENST00000360019 THEMISQ8N1K5 641 aaPredicted RBP25.99■■□□□ 1.75
CLN3-206ENST00000360019 SETD1AO15047 1707 aaKnown RBP25.97■■□□□ 1.75
CLN3-206ENST00000360019 TRAK1Q9UPV9 953 aa25.95■■□□□ 1.75
CLN3-206ENST00000360019 TXNDC2Q86VQ3 553 aa25.95■■□□□ 1.74
CLN3-206ENST00000360019 PLEKHG1Q9ULL1 1385 aa25.94■■□□□ 1.74
CLN3-206ENST00000360019 DISP3Q9P2K9 1392 aa25.93■■□□□ 1.74
CLN3-206ENST00000360019 EID1Q9Y6B2 187 aa25.93■■□□□ 1.74
CLN3-206ENST00000360019 YTHDC2Q9H6S0 1430 aaKnown RBP25.91■■□□□ 1.74
CLN3-206ENST00000360019 KDM4FA0A1W2PPD8 638 aa25.91■■□□□ 1.74
CLN3-206ENST00000360019 ARHGEF28Q8N1W1 1705 aaKnown RBP25.9■■□□□ 1.74
CLN3-206ENST00000360019 ADAMTS13Q76LX8 1427 aa25.9■■□□□ 1.74
CLN3-206ENST00000360019 TMF1P82094 1093 aa25.88■■□□□ 1.73
CLN3-206ENST00000360019 CENPJQ9HC77 1338 aaPredicted RBP25.88■■□□□ 1.73
CLN3-206ENST00000360019 POLR3GLQ9BT43 218 aa25.88■■□□□ 1.73
CLN3-206ENST00000360019 METP08581 1390 aa25.87■■□□□ 1.73
CLN3-206ENST00000360019 STK26Q9P289 416 aa25.87■■□□□ 1.73
CLN3-206ENST00000360019 SBNO2Q9Y2G9 1366 aa25.87■■□□□ 1.73
CLN3-206ENST00000360019 BCANQ96GW7 911 aa25.86■■□□□ 1.73
CLN3-206ENST00000360019 MIER1Q8N108 512 aa25.86■■□□□ 1.73
CLN3-206ENST00000360019 MED14O60244 1454 aa25.85■■□□□ 1.73
CLN3-206ENST00000360019 QRICH2Q9H0J4 1663 aa25.85■■□□□ 1.73
CLN3-206ENST00000360019 LRPPRCP42704 1394 aaKnown RBP25.84■■□□□ 1.73
CLN3-206ENST00000360019 ABCC11Q96J66 1382 aa25.8■■□□□ 1.72
CLN3-206ENST00000360019 DLC1Q96QB1 1528 aa25.8■■□□□ 1.72
CLN3-206ENST00000360019 SLC24A1O60721 1099 aa25.79■■□□□ 1.72
CLN3-206ENST00000360019 SLC26A8Q96RN1 970 aa25.79■■□□□ 1.72
CLN3-206ENST00000360019 ANKLE2Q86XL3 938 aa25.79■■□□□ 1.72
CLN3-206ENST00000360019 PRAM1Q96QH2 718 aa25.77■■□□□ 1.72
CLN3-206ENST00000360019 DIP2AQ14689 1571 aa25.76■■□□□ 1.71
CLN3-206ENST00000360019 TECPR2O15040 1411 aa25.76■■□□□ 1.71
CLN3-206ENST00000360019 CDCA8Q53HL2 280 aa25.76■■□□□ 1.71
CLN3-206ENST00000360019 TBX22Q9Y458 520 aa25.76■■□□□ 1.71
CLN3-206ENST00000360019 KNDC1Q76NI1 1749 aa25.76■■□□□ 1.71
CLN3-206ENST00000360019 SAFB2Q14151 953 aaKnown RBP eCLIP25.74■■□□□ 1.71
CLN3-206ENST00000360019 CPS1P31327 1500 aa25.72■■□□□ 1.71
CLN3-206ENST00000360019 TULP4Q9NRJ4 1543 aa25.72■■□□□ 1.71
CLN3-206ENST00000360019 POGKQ9P215 609 aa25.72■■□□□ 1.71
CLN3-206ENST00000360019 PTPRUQ92729 1446 aa25.72■■□□□ 1.71
CLN3-206ENST00000360019 PLEKHH1Q9ULM0 1364 aa25.72■■□□□ 1.71
CLN3-206ENST00000360019 WAPLQ7Z5K2 1190 aa25.7■■□□□ 1.71
CLN3-206ENST00000360019 FAM135BQ49AJ0 1406 aa25.69■■□□□ 1.7
CLN3-206ENST00000360019 SIRT1Q96EB6 747 aa25.68■■□□□ 1.7
CLN3-206ENST00000360019 MYOM1P52179 1685 aa25.68■■□□□ 1.7
CLN3-206ENST00000360019 ANP32CO43423 234 aa25.67■■□□□ 1.7
CLN3-206ENST00000360019 ROBO2Q9HCK4 1378 aa25.67■■□□□ 1.7
CLN3-206ENST00000360019 EVC2Q86UK5 1308 aa25.67■■□□□ 1.7
CLN3-206ENST00000360019 MINK1Q8N4C8 1332 aaPredicted RBP25.67■■□□□ 1.7
CLN3-206ENST00000360019 NPHP4O75161 1426 aaPredicted RBP25.67■■□□□ 1.7
CLN3-206ENST00000360019 NCKAP5LQ9HCH0 1330 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms