RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 MNS1Q8NEH6 495 aa19.55■□□□□ 0.72
COL18A1-203ENST00000359759 MYBBP1AQ9BQG0 1328 aaKnown RBP19.54■□□□□ 0.72
COL18A1-203ENST00000359759 SOGA1O94964 1423 aa19.54■□□□□ 0.72
COL18A1-203ENST00000359759 CPLX1O14810 134 aa19.54■□□□□ 0.72
COL18A1-203ENST00000359759 TTLL5Q6EMB2 1281 aa19.53■□□□□ 0.72
COL18A1-203ENST00000359759 NFXL1Q6ZNB6 911 aa19.53■□□□□ 0.72
COL18A1-203ENST00000359759 TRIM34Q9BYJ4 488 aa19.53■□□□□ 0.72
COL18A1-203ENST00000359759 CARMIL1Q5VZK9 1371 aa19.53■□□□□ 0.72
COL18A1-203ENST00000359759 CCDC47Q96A33 483 aaKnown RBP19.53■□□□□ 0.72
COL18A1-203ENST00000359759 MAP7D2Q96T17 732 aa19.52■□□□□ 0.72
COL18A1-203ENST00000359759 CTDP1Q9Y5B0 961 aaPredicted RBP19.52■□□□□ 0.72
COL18A1-203ENST00000359759 NACADO15069 1562 aa19.52■□□□□ 0.72
COL18A1-203ENST00000359759 NOM1Q5C9Z4 860 aaKnown RBP19.51■□□□□ 0.71
COL18A1-203ENST00000359759 SAMD1Q6SPF0 538 aaPredicted RBP19.51■□□□□ 0.71
COL18A1-203ENST00000359759 PDILTQ8N807 584 aa19.51■□□□□ 0.71
COL18A1-203ENST00000359759 CUX2O14529 1486 aa19.51■□□□□ 0.71
COL18A1-203ENST00000359759 ZKSCAN1P17029 563 aaPredicted RBP19.51■□□□□ 0.71
COL18A1-203ENST00000359759 C1orf141Q5JVX7 400 aa19.5■□□□□ 0.71
COL18A1-203ENST00000359759 IFIT2P09913 472 aaKnown RBP19.5■□□□□ 0.71
COL18A1-203ENST00000359759 RUFY2Q8WXA3 655 aa19.5■□□□□ 0.71
COL18A1-203ENST00000359759 C9orf78Q9NZ63 289 aaPredicted RBP19.5■□□□□ 0.71
COL18A1-203ENST00000359759 CNKSR2Q8WXI2 1034 aa19.5■□□□□ 0.71
COL18A1-203ENST00000359759 HOOK1Q9UJC3 728 aaKnown RBP19.5■□□□□ 0.71
COL18A1-203ENST00000359759 CPLX2Q6PUV4 134 aaKnown RBP19.49■□□□□ 0.71
COL18A1-203ENST00000359759 CHMP5Q9NZZ3 219 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 HNRNPMP52272 730 aaKnown RBP eCLIP19.49■□□□□ 0.716e-10■■■■■ 46.8
COL18A1-203ENST00000359759 AMOTL1Q8IY63 956 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 KIF3BO15066 747 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 MSH5O43196 834 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 NOL10Q9BSC4 688 aaKnown RBP19.49■□□□□ 0.71
COL18A1-203ENST00000359759 SMC3Q9UQE7 1217 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.49■□□□□ 0.718e-7■■■■■ 55.2
COL18A1-203ENST00000359759 REC8O95072 547 aa19.49■□□□□ 0.71
COL18A1-203ENST00000359759 ARGLU1Q9NWB6 273 aaPredicted RBP19.49■□□□□ 0.71
COL18A1-203ENST00000359759 PHLDB1Q86UU1 1377 aa19.48■□□□□ 0.71
COL18A1-203ENST00000359759 E9PSI1 815 aa19.48■□□□□ 0.71
COL18A1-203ENST00000359759 CHMP4CQ96CF2 233 aa19.48■□□□□ 0.71
COL18A1-203ENST00000359759 CT47A1Q5JQC4 288 aaPredicted RBP19.47■□□□□ 0.71
COL18A1-203ENST00000359759 KRI1Q8N9T8 703 aaKnown RBP19.47■□□□□ 0.71
COL18A1-203ENST00000359759 CAGE1Q8TC20 777 aa19.47■□□□□ 0.71
COL18A1-203ENST00000359759 ANKRD30AQ9BXX3 1397 aa19.46■□□□□ 0.71
COL18A1-203ENST00000359759 RNF214Q8ND24 703 aa19.46■□□□□ 0.71
COL18A1-203ENST00000359759 HSP90B2PQ58FF3 399 aa19.45■□□□□ 0.7
COL18A1-203ENST00000359759 PLCD4Q9BRC7 762 aa19.45■□□□□ 0.7
COL18A1-203ENST00000359759 ACBD3Q9H3P7 528 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 HSP90AB2PQ58FF8 381 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 ST20-MTHFSA0A0A6YYL1 179 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 ZFYVE27Q5T4F4 411 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 H0YHG0 523 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 CDR1P51861 262 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 VPS37DQ86XT2 251 aa19.44■□□□□ 0.7
COL18A1-203ENST00000359759 FYB1O15117 783 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 ODF2Q5BJF6 829 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 CGNL1Q0VF96 1302 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 TRDNQ13061 729 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 APAF1O14727 1248 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 RBM10P98175 930 aaKnown RBP19.43■□□□□ 0.7
COL18A1-203ENST00000359759 DHX37Q8IY37 1157 aaKnown RBP19.43■□□□□ 0.7
COL18A1-203ENST00000359759 VPS8Q8N3P4 1428 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 CCDC27Q2M243 656 aa19.43■□□□□ 0.7
COL18A1-203ENST00000359759 CCDC43Q96MW1 224 aaKnown RBP19.42■□□□□ 0.7
COL18A1-203ENST00000359759 ERICH2A1L162 156 aa19.42■□□□□ 0.7
COL18A1-203ENST00000359759 MTMR7Q9Y216 660 aa19.42■□□□□ 0.7
COL18A1-203ENST00000359759 NEXNQ0ZGT2 675 aa19.42■□□□□ 0.7
COL18A1-203ENST00000359759 CCDC73Q6ZRK6 1079 aa19.42■□□□□ 0.7
COL18A1-203ENST00000359759 EID1Q9Y6B2 187 aa19.42■□□□□ 0.7
COL18A1-203ENST00000359759 LRRFIP1Q32MZ4 808 aaKnown RBP19.41■□□□□ 0.7
COL18A1-203ENST00000359759 FANCIQ9NVI1 1328 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 FMN1Q68DA7 1419 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 NASPP49321 788 aaPredicted RBP19.41■□□□□ 0.7
COL18A1-203ENST00000359759 COG3Q96JB2 828 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 TEFQ10587 303 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 EVA1CP58658 441 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 CCDC39Q9UFE4 941 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 NFKBIBQ15653 356 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 LNPKQ9C0E8 428 aa19.41■□□□□ 0.7
COL18A1-203ENST00000359759 EPS15P42566 896 aa19.4■□□□□ 0.7
COL18A1-203ENST00000359759 DDX19BQ9UMR2 479 aa19.4■□□□□ 0.7
COL18A1-203ENST00000359759 RNF20Q5VTR2 975 aa19.4■□□□□ 0.7
COL18A1-203ENST00000359759 TTC5Q8N0Z6 440 aa19.4■□□□□ 0.7
COL18A1-203ENST00000359759 INTS3Q68E01 1043 aaKnown RBP19.4■□□□□ 0.7
COL18A1-203ENST00000359759 OLFM4Q6UX06 510 aa19.39■□□□□ 0.69
COL18A1-203ENST00000359759 DZIP1LQ8IYY4 767 aaKnown RBP19.39■□□□□ 0.69
COL18A1-203ENST00000359759 C22orf23Q9BZE7 217 aa19.38■□□□□ 0.69
COL18A1-203ENST00000359759 WASHC2CQ9Y4E1 1318 aa19.38■□□□□ 0.69
COL18A1-203ENST00000359759 CYB5RLQ6IPT4 315 aa19.38■□□□□ 0.69
COL18A1-203ENST00000359759 G3BP1Q13283 466 aaKnown RBP eCLIP19.38■□□□□ 0.69
COL18A1-203ENST00000359759 NUCB2P80303 420 aa19.37■□□□□ 0.69
COL18A1-203ENST00000359759 RDXP35241 583 aaKnown RBP19.37■□□□□ 0.69
COL18A1-203ENST00000359759 SYTL4Q96C24 671 aaPredicted RBP19.37■□□□□ 0.69
COL18A1-203ENST00000359759 ZBED9Q6R2W3 1325 aa19.37■□□□□ 0.69
COL18A1-203ENST00000359759 CCDC191Q8NCU4 936 aa19.37■□□□□ 0.69
COL18A1-203ENST00000359759 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.36■□□□□ 0.693e-6■□□□□ 8.2
COL18A1-203ENST00000359759 SMC2O95347 1197 aa19.36■□□□□ 0.69
COL18A1-203ENST00000359759 RIPK4P57078 832 aa19.36■□□□□ 0.69
COL18A1-203ENST00000359759 FKBP5Q13451 457 aaPredicted RBP19.36■□□□□ 0.69
COL18A1-203ENST00000359759 CECR2Q9BXF3 1484 aa19.35■□□□□ 0.69
COL18A1-203ENST00000359759 SAFBQ15424 915 aaKnown RBP eCLIP19.35■□□□□ 0.69
COL18A1-203ENST00000359759 CAVIN1Q6NZI2 390 aaKnown RBP19.35■□□□□ 0.69
COL18A1-203ENST00000359759 CWC15Q9P013 229 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms