RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 FBXW7Q969H0 707 aa22.52■■□□□ 1.2
SHANK1-202ENST00000359082 CTDP1Q9Y5B0 961 aaPredicted RBP22.52■■□□□ 1.2
SHANK1-202ENST00000359082 AMOTL1Q8IY63 956 aa22.52■■□□□ 1.2
SHANK1-202ENST00000359082 RAPGEF2Q9Y4G8 1499 aa22.52■■□□□ 1.2
SHANK1-202ENST00000359082 SKOR2Q2VWA4 1001 aaPredicted RBP22.51■■□□□ 1.19
SHANK1-202ENST00000359082 APPP05067 770 aa22.51■■□□□ 1.19
SHANK1-202ENST00000359082 COG6Q9Y2V7 657 aa22.51■■□□□ 1.19
SHANK1-202ENST00000359082 TTC5Q8N0Z6 440 aa22.5■■□□□ 1.19
SHANK1-202ENST00000359082 CCDC18Q5T9S5 1454 aa22.5■■□□□ 1.19
SHANK1-202ENST00000359082 C9orf78Q9NZ63 289 aaPredicted RBP22.5■■□□□ 1.19
SHANK1-202ENST00000359082 RRP1P56182 461 aaKnown RBP22.49■■□□□ 1.19
SHANK1-202ENST00000359082 WIZO95785 1651 aa22.49■■□□□ 1.19
SHANK1-202ENST00000359082 ST20-MTHFSA0A0A6YYL1 179 aa22.49■■□□□ 1.19
SHANK1-202ENST00000359082 FOSBP53539 338 aa22.49■■□□□ 1.19
SHANK1-202ENST00000359082 E9PSI1 815 aa22.48■■□□□ 1.19
SHANK1-202ENST00000359082 DHX16O60231 1041 aaKnown RBP22.48■■□□□ 1.19
SHANK1-202ENST00000359082 CHMP4CQ96CF2 233 aa22.48■■□□□ 1.19
SHANK1-202ENST00000359082 TEFQ10587 303 aa22.48■■□□□ 1.19
SHANK1-202ENST00000359082 NEXNQ0ZGT2 675 aa22.47■■□□□ 1.19
SHANK1-202ENST00000359082 FHOD3Q2V2M9 1422 aa22.47■■□□□ 1.19
SHANK1-202ENST00000359082 CGNL1Q0VF96 1302 aa22.47■■□□□ 1.19
SHANK1-202ENST00000359082 GPS2Q13227 327 aa22.47■■□□□ 1.19
SHANK1-202ENST00000359082 GSE1Q14687 1217 aa22.47■■□□□ 1.19
SHANK1-202ENST00000359082 ZNF771Q7L3S4 317 aaPredicted RBP22.47■■□□□ 1.19
SHANK1-202ENST00000359082 IFIT2P09913 472 aaKnown RBP22.46■■□□□ 1.19
SHANK1-202ENST00000359082 RUFY2Q8WXA3 655 aa22.46■■□□□ 1.19
SHANK1-202ENST00000359082 CCDC144AA2RUR9 1427 aa22.45■■□□□ 1.18
SHANK1-202ENST00000359082 LRRFIP1Q32MZ4 808 aaKnown RBP22.44■■□□□ 1.18
SHANK1-202ENST00000359082 NFXL1Q6ZNB6 911 aa22.44■■□□□ 1.18
SHANK1-202ENST00000359082 VPS37DQ86XT2 251 aa22.44■■□□□ 1.18
SHANK1-202ENST00000359082 MINK1Q8N4C8 1332 aaPredicted RBP22.43■■□□□ 1.18
SHANK1-202ENST00000359082 VSIG10Q8N0Z9 540 aa22.43■■□□□ 1.18
SHANK1-202ENST00000359082 BICD2Q8TD16 824 aa22.43■■□□□ 1.18
SHANK1-202ENST00000359082 CCDC47Q96A33 483 aaKnown RBP22.43■■□□□ 1.18
SHANK1-202ENST00000359082 CPLX1O14810 134 aa22.43■■□□□ 1.18
SHANK1-202ENST00000359082 EVC2Q86UK5 1308 aa22.43■■□□□ 1.18
SHANK1-202ENST00000359082 ZKSCAN1P17029 563 aaPredicted RBP22.42■■□□□ 1.18
SHANK1-202ENST00000359082 SYTL4Q96C24 671 aaPredicted RBP22.42■■□□□ 1.18
SHANK1-202ENST00000359082 CPLX2Q6PUV4 134 aaKnown RBP22.42■■□□□ 1.18
SHANK1-202ENST00000359082 HOMER1Q86YM7 354 aa22.4■■□□□ 1.18
SHANK1-202ENST00000359082 ANKRD20A12PQ8NF67 263 aa22.4■■□□□ 1.18
SHANK1-202ENST00000359082 IPO7O95373 1038 aaKnown RBP22.39■■□□□ 1.18
SHANK1-202ENST00000359082 REC8O95072 547 aa22.39■■□□□ 1.18
SHANK1-202ENST00000359082 UACAQ9BZF9 1416 aa22.39■■□□□ 1.17
SHANK1-202ENST00000359082 JPH4Q96JJ6 628 aa22.38■■□□□ 1.17
SHANK1-202ENST00000359082 SAMD1Q6SPF0 538 aaPredicted RBP22.38■■□□□ 1.17
SHANK1-202ENST00000359082 APAF1O14727 1248 aa22.37■■□□□ 1.17
SHANK1-202ENST00000359082 HOOK1Q9UJC3 728 aaKnown RBP22.37■■□□□ 1.17
SHANK1-202ENST00000359082 VPS37CA5D8V6 355 aaPredicted RBP22.37■■□□□ 1.17
SHANK1-202ENST00000359082 BCL11BQ9C0K0 894 aaPredicted RBP22.37■■□□□ 1.17
SHANK1-202ENST00000359082 ERICH2A1L162 156 aa22.37■■□□□ 1.17
SHANK1-202ENST00000359082 TRDNQ13061 729 aa22.37■■□□□ 1.17
SHANK1-202ENST00000359082 DDX19BQ9UMR2 479 aa22.37■■□□□ 1.17
SHANK1-202ENST00000359082 ATAD2BQ9ULI0 1458 aa22.36■■□□□ 1.17
SHANK1-202ENST00000359082 RIPK4P57078 832 aa22.36■■□□□ 1.17
SHANK1-202ENST00000359082 CNKSR2Q8WXI2 1034 aa22.36■■□□□ 1.17
SHANK1-202ENST00000359082 G3BP1Q13283 466 aaKnown RBP eCLIP22.35■■□□□ 1.17
SHANK1-202ENST00000359082 NAP1L1P55209 391 aaKnown RBP22.35■■□□□ 1.17
SHANK1-202ENST00000359082 DIAPH1O60610 1272 aaKnown RBP22.35■■□□□ 1.17
SHANK1-202ENST00000359082 MEX3CQ5U5Q3 659 aaKnown RBP22.34■■□□□ 1.17
SHANK1-202ENST00000359082 KRI1Q8N9T8 703 aaKnown RBP22.33■■□□□ 1.17
SHANK1-202ENST00000359082 FYB1O15117 783 aa22.33■■□□□ 1.17
SHANK1-202ENST00000359082 RNF20Q5VTR2 975 aa22.33■■□□□ 1.17
SHANK1-202ENST00000359082 SASS6Q6UVJ0 657 aa22.33■■□□□ 1.17
SHANK1-202ENST00000359082 SMARCA4P51532 1647 aa22.33■■□□□ 1.17
SHANK1-202ENST00000359082 FKBP5Q13451 457 aaPredicted RBP22.33■■□□□ 1.17
SHANK1-202ENST00000359082 DZIP1LQ8IYY4 767 aaKnown RBP22.33■■□□□ 1.16
SHANK1-202ENST00000359082 CCDC43Q96MW1 224 aaKnown RBP22.33■■□□□ 1.16
SHANK1-202ENST00000359082 SMC3Q9UQE7 1217 aa22.32■■□□□ 1.16
SHANK1-202ENST00000359082 CWC22Q9HCG8 908 aaKnown RBP22.32■■□□□ 1.16
SHANK1-202ENST00000359082 KDM4AO75164 1064 aa22.32■■□□□ 1.16
SHANK1-202ENST00000359082 DDX58O95786 925 aaKnown RBP22.32■■□□□ 1.16
SHANK1-202ENST00000359082 USP47Q96K76 1375 aa22.31■■□□□ 1.16
SHANK1-202ENST00000359082 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
SHANK1-202ENST00000359082 VGFO15240 615 aaPredicted RBP22.31■■□□□ 1.16
SHANK1-202ENST00000359082 TEX35Q5T0J7 233 aa22.31■■□□□ 1.16
SHANK1-202ENST00000359082 FAM13BQ9NYF5 915 aa22.3■■□□□ 1.16
SHANK1-202ENST00000359082 ROCK1Q13464 1354 aa22.3■■□□□ 1.16
SHANK1-202ENST00000359082 PSME1Q06323 249 aa22.29■■□□□ 1.16
SHANK1-202ENST00000359082 ZBED9Q6R2W3 1325 aa22.29■■□□□ 1.16
SHANK1-202ENST00000359082 INTS3Q68E01 1043 aaKnown RBP22.29■■□□□ 1.16
SHANK1-202ENST00000359082 API5Q9BZZ5 524 aaKnown RBP22.29■■□□□ 1.16
SHANK1-202ENST00000359082 PRKRIP1Q9H875 184 aaPredicted RBP22.28■■□□□ 1.16
SHANK1-202ENST00000359082 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.27■■□□□ 1.16
SHANK1-202ENST00000359082 RUFY1Q96T51 708 aa22.27■■□□□ 1.16
SHANK1-202ENST00000359082 KLHL34Q8N239 644 aa22.27■■□□□ 1.16
SHANK1-202ENST00000359082 TSPYL4Q9UJ04 414 aa22.27■■□□□ 1.16
SHANK1-202ENST00000359082 CHMP5Q9NZZ3 219 aa22.27■■□□□ 1.16
SHANK1-202ENST00000359082 IFT57Q9NWB7 429 aa22.26■■□□□ 1.15
SHANK1-202ENST00000359082 NEUROD6Q96NK8 337 aa22.26■■□□□ 1.15
SHANK1-202ENST00000359082 CCDC27Q2M243 656 aa22.26■■□□□ 1.15
SHANK1-202ENST00000359082 AIMP1Q12904 312 aaKnown RBP22.25■■□□□ 1.15
SHANK1-202ENST00000359082 MTMR7Q9Y216 660 aa22.25■■□□□ 1.15
SHANK1-202ENST00000359082 CT47A1Q5JQC4 288 aaPredicted RBP22.25■■□□□ 1.15
SHANK1-202ENST00000359082 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.25■■□□□ 1.15
SHANK1-202ENST00000359082 RBM33Q96EV2 1170 aaKnown RBP22.25■■□□□ 1.15
SHANK1-202ENST00000359082 HMOX1P09601 288 aa22.25■■□□□ 1.15
SHANK1-202ENST00000359082 AK7Q96M32 723 aa22.24■■□□□ 1.15
SHANK1-202ENST00000359082 WASHC4Q2M389 1173 aa22.24■■□□□ 1.15
SHANK1-202ENST00000359082 SAFBQ15424 915 aaKnown RBP eCLIP22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 366.1 ms