RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 HIRIP3Q9BW71 556 aaPredicted RBP20.83■□□□□ 0.92
CXCL12-201ENST00000343575 RPGRIP1LQ68CZ1 1315 aa20.83■□□□□ 0.92
CXCL12-201ENST00000343575 NEXMIFQ5QGS0 1516 aa20.83■□□□□ 0.92
CXCL12-201ENST00000343575 NBPF1Q3BBV0 1214 aa20.82■□□□□ 0.92
CXCL12-201ENST00000343575 A2ML1A8K2U0 1454 aa20.81■□□□□ 0.92
CXCL12-201ENST00000343575 GPRASP1Q5JY77 1395 aa20.79■□□□□ 0.92
CXCL12-201ENST00000343575 HSPA5P11021 654 aaKnown RBP20.79■□□□□ 0.92
CXCL12-201ENST00000343575 DIEXFQ68CQ4 756 aaKnown RBP20.78■□□□□ 0.92
CXCL12-201ENST00000343575 NUTM2DQ5VT03 806 aaPredicted RBP20.77■□□□□ 0.92
CXCL12-201ENST00000343575 PLPPR3Q6T4P5 718 aa20.77■□□□□ 0.92
CXCL12-201ENST00000343575 ROCK2O75116 1388 aaKnown RBP20.76■□□□□ 0.91
CXCL12-201ENST00000343575 EIF4G2P78344 907 aaKnown RBP eCLIP20.76■□□□□ 0.91
CXCL12-201ENST00000343575 NLRP1Q9C000 1473 aa20.76■□□□□ 0.91
CXCL12-201ENST00000343575 CARD11Q9BXL7 1154 aa20.75■□□□□ 0.91
CXCL12-201ENST00000343575 PIK3C2GO75747 1445 aa20.75■□□□□ 0.91
CXCL12-201ENST00000343575 ZFYVE9O95405 1425 aa20.75■□□□□ 0.91
CXCL12-201ENST00000343575 STAG3Q9UJ98 1225 aa20.74■□□□□ 0.91
CXCL12-201ENST00000343575 UBR1Q8IWV7 1749 aa20.74■□□□□ 0.91
CXCL12-201ENST00000343575 KDM5AP29375 1690 aaKnown RBP20.74■□□□□ 0.91
CXCL12-201ENST00000343575 CFAP70Q5T0N1 1121 aa20.73■□□□□ 0.91
CXCL12-201ENST00000343575 USP47Q96K76 1375 aa20.73■□□□□ 0.91
CXCL12-201ENST00000343575 VGFO15240 615 aaPredicted RBP20.73■□□□□ 0.91
CXCL12-201ENST00000343575 KIAA1210Q9ULL0 1709 aa20.72■□□□□ 0.91
CXCL12-201ENST00000343575 LAMC1P11047 1609 aa20.71■□□□□ 0.91
CXCL12-201ENST00000343575 C14orf93Q9H972 538 aaKnown RBP20.7■□□□□ 0.9
CXCL12-201ENST00000343575 RIMS2Q9UQ26 1411 aa20.7■□□□□ 0.9
CXCL12-201ENST00000343575 MYO3AQ8NEV4 1616 aa20.69■□□□□ 0.9
CXCL12-201ENST00000343575 PTPRMP28827 1452 aa20.69■□□□□ 0.9
CXCL12-201ENST00000343575 TMEM2Q9UHN6 1383 aa20.67■□□□□ 0.9
CXCL12-201ENST00000343575 C11orf95C9JLR9 678 aaPredicted RBP20.67■□□□□ 0.9
CXCL12-201ENST00000343575 ADGRB1O14514 1584 aa20.65■□□□□ 0.9
CXCL12-201ENST00000343575 GTF3C3Q9Y5Q9 886 aa20.65■□□□□ 0.9
CXCL12-201ENST00000343575 ST20-MTHFSA0A0A6YYL1 179 aa20.64■□□□□ 0.9
CXCL12-201ENST00000343575 SETBP1Q9Y6X0 1596 aa20.64■□□□□ 0.89
CXCL12-201ENST00000343575 IQGAP1P46940 1657 aa20.64■□□□□ 0.89
CXCL12-201ENST00000343575 SETD1BQ9UPS6 1966 aaKnown RBP20.64■□□□□ 0.89
CXCL12-201ENST00000343575 CEP170BQ9Y4F5 1589 aaPredicted RBP20.63■□□□□ 0.89
CXCL12-201ENST00000343575 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
CXCL12-201ENST00000343575 ARHGAP23Q9P227 1491 aa20.62■□□□□ 0.89
CXCL12-201ENST00000343575 KDM4FA0A1W2PPD8 638 aa20.62■□□□□ 0.89
CXCL12-201ENST00000343575 SCAF11Q99590 1463 aaKnown RBP20.61■□□□□ 0.89
CXCL12-201ENST00000343575 LTKP29376 864 aa20.61■□□□□ 0.89
CXCL12-201ENST00000343575 TMEM132EQ6IEE7 984 aa20.61■□□□□ 0.89
CXCL12-201ENST00000343575 SLIT1O75093 1534 aa20.61■□□□□ 0.89
CXCL12-201ENST00000343575 ASXL1Q8IXJ9 1541 aa20.61■□□□□ 0.89
CXCL12-201ENST00000343575 WASHC2AQ641Q2 1341 aa20.61■□□□□ 0.89
CXCL12-201ENST00000343575 NRXN3Q9Y4C0 1643 aa20.6■□□□□ 0.89
CXCL12-201ENST00000343575 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.6■□□□□ 0.89
CXCL12-201ENST00000343575 TESK2Q96S53 571 aa20.59■□□□□ 0.89
CXCL12-201ENST00000343575 ALKQ9UM73 1620 aa20.59■□□□□ 0.89
CXCL12-201ENST00000343575 ZNF142P52746 1687 aaPredicted RBP20.59■□□□□ 0.89
CXCL12-201ENST00000343575 THEMISQ8N1K5 641 aaPredicted RBP20.58■□□□□ 0.88
CXCL12-201ENST00000343575 SETD1AO15047 1707 aaKnown RBP20.57■□□□□ 0.88
CXCL12-201ENST00000343575 HDGFP51858 240 aaKnown RBP20.55■□□□□ 0.88
CXCL12-201ENST00000343575 TXNDC2Q86VQ3 553 aa20.55■□□□□ 0.88
CXCL12-201ENST00000343575 KIF7Q2M1P5 1343 aa20.55■□□□□ 0.88
CXCL12-201ENST00000343575 CCDC7Q96M83 1385 aa20.54■□□□□ 0.88
CXCL12-201ENST00000343575 DDX10Q13206 875 aaKnown RBP20.53■□□□□ 0.88
CXCL12-201ENST00000343575 PLEKHG1Q9ULL1 1385 aa20.52■□□□□ 0.88
CXCL12-201ENST00000343575 ADAMTS13Q76LX8 1427 aa20.52■□□□□ 0.88
CXCL12-201ENST00000343575 POLR1AO95602 1720 aaPredicted RBP20.52■□□□□ 0.88
CXCL12-201ENST00000343575 TRAK1Q9UPV9 953 aa20.52■□□□□ 0.87
CXCL12-201ENST00000343575 METP08581 1390 aa20.5■□□□□ 0.87
CXCL12-201ENST00000343575 MED14O60244 1454 aa20.5■□□□□ 0.87
CXCL12-201ENST00000343575 EID1Q9Y6B2 187 aa20.5■□□□□ 0.87
CXCL12-201ENST00000343575 DISP3Q9P2K9 1392 aa20.49■□□□□ 0.87
CXCL12-201ENST00000343575 YTHDC2Q9H6S0 1430 aaKnown RBP20.49■□□□□ 0.87
CXCL12-201ENST00000343575 EIF3AQ14152 1382 aaKnown RBP20.48■□□□□ 0.87
CXCL12-201ENST00000343575 ARHGEF28Q8N1W1 1705 aaKnown RBP20.47■□□□□ 0.87
CXCL12-201ENST00000343575 STK26Q9P289 416 aa20.45■□□□□ 0.86
CXCL12-201ENST00000343575 LRPPRCP42704 1394 aaKnown RBP20.44■□□□□ 0.86
CXCL12-201ENST00000343575 CENPJQ9HC77 1338 aaPredicted RBP20.44■□□□□ 0.86
CXCL12-201ENST00000343575 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
CXCL12-201ENST00000343575 SBNO2Q9Y2G9 1366 aa20.43■□□□□ 0.86
CXCL12-201ENST00000343575 ABCC11Q96J66 1382 aa20.42■□□□□ 0.86
CXCL12-201ENST00000343575 ANKLE2Q86XL3 938 aa20.42■□□□□ 0.86
CXCL12-201ENST00000343575 BCANQ96GW7 911 aa20.42■□□□□ 0.86
CXCL12-201ENST00000343575 TMF1P82094 1093 aa20.41■□□□□ 0.86
CXCL12-201ENST00000343575 TBX22Q9Y458 520 aa20.41■□□□□ 0.86
CXCL12-201ENST00000343575 QRICH2Q9H0J4 1663 aa20.4■□□□□ 0.86
CXCL12-201ENST00000343575 PTPRUQ92729 1446 aa20.39■□□□□ 0.86
CXCL12-201ENST00000343575 DLC1Q96QB1 1528 aa20.39■□□□□ 0.86
CXCL12-201ENST00000343575 TECPR2O15040 1411 aa20.38■□□□□ 0.85
CXCL12-201ENST00000343575 PRAM1Q96QH2 718 aa20.38■□□□□ 0.85
CXCL12-201ENST00000343575 POLR3GLQ9BT43 218 aa20.37■□□□□ 0.85
CXCL12-201ENST00000343575 PLEKHH1Q9ULM0 1364 aa20.37■□□□□ 0.85
CXCL12-201ENST00000343575 MIER1Q8N108 512 aa20.37■□□□□ 0.85
CXCL12-201ENST00000343575 DIP2AQ14689 1571 aa20.36■□□□□ 0.85
CXCL12-201ENST00000343575 KNDC1Q76NI1 1749 aa20.36■□□□□ 0.85
CXCL12-201ENST00000343575 SAFB2Q14151 953 aaKnown RBP eCLIP20.35■□□□□ 0.85
CXCL12-201ENST00000343575 WAPLQ7Z5K2 1190 aa20.35■□□□□ 0.85
CXCL12-201ENST00000343575 NCKAP5LQ9HCH0 1330 aa20.35■□□□□ 0.85
CXCL12-201ENST00000343575 LMTK3Q96Q04 1460 aa20.34■□□□□ 0.85
CXCL12-201ENST00000343575 CPS1P31327 1500 aa20.34■□□□□ 0.85
CXCL12-201ENST00000343575 TULP4Q9NRJ4 1543 aa20.34■□□□□ 0.85
CXCL12-201ENST00000343575 ROBO2Q9HCK4 1378 aa20.34■□□□□ 0.85
CXCL12-201ENST00000343575 SLC24A1O60721 1099 aa20.33■□□□□ 0.84
CXCL12-201ENST00000343575 HSPA2P54652 639 aa20.33■□□□□ 0.84
CXCL12-201ENST00000343575 SIRT1Q96EB6 747 aa20.33■□□□□ 0.84
CXCL12-201ENST00000343575 NPHP4O75161 1426 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms