RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MARCH6O60337 910 aa10.72□□□□□ -0.69
HMGB1-203ENST00000341423 WWC2Q6AWC2 1192 aa10.72□□□□□ -0.69
HMGB1-203ENST00000341423 C19orf44Q9H6X5 657 aa10.72□□□□□ -0.69
HMGB1-203ENST00000341423 WWC3Q9ULE0 1092 aa10.72□□□□□ -0.69
HMGB1-203ENST00000341423 CABP4P57796 275 aa10.71□□□□□ -0.69
HMGB1-203ENST00000341423 ARHGAP5Q13017 1502 aa10.71□□□□□ -0.69
HMGB1-203ENST00000341423 PLEKHO1Q53GL0 409 aaPredicted RBP10.71□□□□□ -0.69
HMGB1-203ENST00000341423 SPON1Q9HCB6 807 aa10.71□□□□□ -0.69
HMGB1-203ENST00000341423 FGD5Q6ZNL6 1462 aa10.71□□□□□ -0.69
HMGB1-203ENST00000341423 TCERG1O14776 1098 aaKnown RBP10.71□□□□□ -0.7
HMGB1-203ENST00000341423 YY1P25490 414 aa10.71□□□□□ -0.7
HMGB1-203ENST00000341423 WDR78Q5VTH9 848 aa10.71□□□□□ -0.7
HMGB1-203ENST00000341423 DDX58O95786 925 aaKnown RBP10.71□□□□□ -0.7
HMGB1-203ENST00000341423 DIEXFQ68CQ4 756 aaKnown RBP10.71□□□□□ -0.7
HMGB1-203ENST00000341423 FANCAO15360 1455 aa10.71□□□□□ -0.7
HMGB1-203ENST00000341423 KCNH5Q8NCM2 988 aa10.7□□□□□ -0.7
HMGB1-203ENST00000341423 TOMM22Q9NS69 142 aa10.7□□□□□ -0.7
HMGB1-203ENST00000341423 SETD5Q9C0A6 1442 aa10.7□□□□□ -0.7
HMGB1-203ENST00000341423 FTSJ3Q8IY81 847 aaKnown RBP10.7□□□□□ -0.7
HMGB1-203ENST00000341423 ZNF408Q9H9D4 720 aa10.7□□□□□ -0.7
HMGB1-203ENST00000341423 GPBP1L1Q9HC44 474 aaPredicted RBP10.7□□□□□ -0.7
HMGB1-203ENST00000341423 KIF22Q14807 665 aa10.69□□□□□ -0.7
HMGB1-203ENST00000341423 KRT28Q7Z3Y7 464 aa10.69□□□□□ -0.7
HMGB1-203ENST00000341423 SMARCC1Q92922 1105 aaPredicted RBP10.69□□□□□ -0.7
HMGB1-203ENST00000341423 PHF14O94880 888 aa10.69□□□□□ -0.7
HMGB1-203ENST00000341423 CCDC88BA6NC98 1476 aa10.69□□□□□ -0.7
HMGB1-203ENST00000341423 TNRQ92752 1358 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 UPF2Q9HAU5 1272 aaKnown RBP10.68□□□□□ -0.7
HMGB1-203ENST00000341423 ROCK1Q13464 1354 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 U2AF1L5P0DN76 240 aaPredicted RBP10.68□□□□□ -0.7
HMGB1-203ENST00000341423 U2AF1Q01081 240 aaKnown RBP eCLIP10.68□□□□□ -0.73e-11■■■■□ 22.7
HMGB1-203ENST00000341423 RPGRQ92834 1020 aaKnown RBP10.68□□□□□ -0.7
HMGB1-203ENST00000341423 ANP32EQ9BTT0 268 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 ARHGAP27Q6ZUM4 889 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 AMOTL2Q9Y2J4 779 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 LAMC3Q9Y6N6 1575 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 TMOD3Q9NYL9 352 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 PHF8Q9UPP1 1060 aa10.68□□□□□ -0.7
HMGB1-203ENST00000341423 MYO1BO43795 1136 aa10.67□□□□□ -0.7
HMGB1-203ENST00000341423 GRIN3BO60391 1043 aa10.67□□□□□ -0.7
HMGB1-203ENST00000341423 IKQ13123 557 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-203ENST00000341423 CASC1Q6TDU7 716 aa10.67□□□□□ -0.7
HMGB1-203ENST00000341423 EAPPQ56P03 285 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-203ENST00000341423 WDR70Q9NW82 654 aa10.67□□□□□ -0.7
HMGB1-203ENST00000341423 STARD3NLO95772 234 aa10.67□□□□□ -0.7
HMGB1-203ENST00000341423 R3HCC1Q9Y3T6 440 aaKnown RBP10.66□□□□□ -0.7
HMGB1-203ENST00000341423 RBM6P78332 1123 aaKnown RBP10.66□□□□□ -0.7
HMGB1-203ENST00000341423 ST5P78524 1137 aa10.66□□□□□ -0.7
HMGB1-203ENST00000341423 WWC1Q8IX03 1113 aa10.66□□□□□ -0.7
HMGB1-203ENST00000341423 VTI1AQ96AJ9 217 aa10.66□□□□□ -0.7
HMGB1-203ENST00000341423 RAB3GAP2Q9H2M9 1393 aa10.66□□□□□ -0.7
HMGB1-203ENST00000341423 TCIRG1Q13488 830 aa10.66□□□□□ -0.7
HMGB1-203ENST00000341423 APBB1O00213 710 aa10.65□□□□□ -0.7
HMGB1-203ENST00000341423 DHX16O60231 1041 aaKnown RBP10.65□□□□□ -0.7
HMGB1-203ENST00000341423 ZSCAN29Q8IWY8 852 aaPredicted RBP10.65□□□□□ -0.7
HMGB1-203ENST00000341423 CCDC43Q96MW1 224 aaKnown RBP10.65□□□□□ -0.7
HMGB1-203ENST00000341423 BCS1LQ9Y276 419 aa10.65□□□□□ -0.7
HMGB1-203ENST00000341423 ABT1Q9ULW3 272 aaKnown RBP10.65□□□□□ -0.7
HMGB1-203ENST00000341423 PLEKHH2Q8IVE3 1493 aa10.65□□□□□ -0.7
HMGB1-203ENST00000341423 FLAD1Q8NFF5 587 aa10.65□□□□□ -0.7
HMGB1-203ENST00000341423 SLC4A3P48751 1232 aa10.65□□□□□ -0.71
HMGB1-203ENST00000341423 EIF6P56537 245 aaKnown RBP10.64□□□□□ -0.71
HMGB1-203ENST00000341423 ZRSR1Q15695 479 aaKnown RBP10.64□□□□□ -0.71
HMGB1-203ENST00000341423 PRKAG2Q9UGJ0 569 aa10.64□□□□□ -0.71
HMGB1-203ENST00000341423 CDCA7Q9BWT1 371 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-203ENST00000341423 MAGI1Q96QZ7 1491 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-203ENST00000341423 MS4A1P11836 297 aa10.64□□□□□ -0.71
HMGB1-203ENST00000341423 CCDC87Q9NVE4 849 aa10.64□□□□□ -0.71
HMGB1-203ENST00000341423 FHOD3Q2V2M9 1422 aa10.63□□□□□ -0.71
HMGB1-203ENST00000341423 FCHSD2O94868 740 aa10.63□□□□□ -0.71
HMGB1-203ENST00000341423 SLAIN2Q9P270 581 aa10.63□□□□□ -0.71
HMGB1-203ENST00000341423 LRRFIP1Q32MZ4 808 aaKnown RBP10.62□□□□□ -0.71
HMGB1-203ENST00000341423 OTUD7BQ6GQQ9 843 aa10.62□□□□□ -0.71
HMGB1-203ENST00000341423 A0A087WZG4 1122 aa10.62□□□□□ -0.71
HMGB1-203ENST00000341423 GIGYF1O75420 1035 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-203ENST00000341423 EIF5BO60841 1220 aaKnown RBP10.61□□□□□ -0.71
HMGB1-203ENST00000341423 OGFOD1Q8N543 542 aa10.61□□□□□ -0.71
HMGB1-203ENST00000341423 ZNF692Q9BU19 519 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-203ENST00000341423 CCDC144AA2RUR9 1427 aa10.61□□□□□ -0.71
HMGB1-203ENST00000341423 FAM196AQ6ZSG2 479 aa10.61□□□□□ -0.71
HMGB1-203ENST00000341423 RBM27Q9P2N5 1060 aaKnown RBP10.61□□□□□ -0.71
HMGB1-203ENST00000341423 KRT27Q7Z3Y8 459 aa10.61□□□□□ -0.71
HMGB1-203ENST00000341423 GPATCH3Q96I76 525 aa10.61□□□□□ -0.71
HMGB1-203ENST00000341423 EIF2S2P20042 333 aaKnown RBP10.6□□□□□ -0.71
HMGB1-203ENST00000341423 GNL3LQ9NVN8 582 aaKnown RBP10.6□□□□□ -0.71
HMGB1-203ENST00000341423 MIA2Q96PC5 1412 aa10.6□□□□□ -0.71
HMGB1-203ENST00000341423 STAC3Q96MF2 364 aa10.6□□□□□ -0.71
HMGB1-203ENST00000341423 ARHGAP35Q9NRY4 1499 aa10.6□□□□□ -0.71
HMGB1-203ENST00000341423 MPRIPQ6WCQ1 1025 aa10.6□□□□□ -0.71
HMGB1-203ENST00000341423 CNTLNQ9NXG0 1405 aa10.59□□□□□ -0.71
HMGB1-203ENST00000341423 NOL8Q76FK4 1167 aaKnown RBP10.59□□□□□ -0.71
HMGB1-203ENST00000341423 GJA3Q9Y6H8 435 aa10.59□□□□□ -0.71
HMGB1-203ENST00000341423 MPHOSPH10O00566 681 aaKnown RBP10.59□□□□□ -0.71
HMGB1-203ENST00000341423 GNL2Q13823 731 aaKnown RBP10.59□□□□□ -0.71
HMGB1-203ENST00000341423 FAM98CQ17RN3 349 aaKnown RBP10.59□□□□□ -0.71
HMGB1-203ENST00000341423 PAF1Q8N7H5 531 aa10.58□□□□□ -0.72
HMGB1-203ENST00000341423 CC2D1BQ5T0F9 858 aaKnown RBP10.58□□□□□ -0.72
HMGB1-203ENST00000341423 RRP7AQ9Y3A4 280 aaKnown RBP10.58□□□□□ -0.72
HMGB1-203ENST00000341423 FAM83GA6ND36 823 aa10.57□□□□□ -0.72
HMGB1-203ENST00000341423 FAM9BQ8IZU0 186 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms