RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 SLFN5Q08AF3 891 aa18.67■□□□□ 0.58
CPSF7-201ENST00000340437 CLUAP1Q96AJ1 413 aa18.67■□□□□ 0.58
CPSF7-201ENST00000340437 MAGI2Q86UL8 1455 aa18.67■□□□□ 0.58
CPSF7-201ENST00000340437 BRPF3Q9ULD4 1205 aa18.67■□□□□ 0.58
CPSF7-201ENST00000340437 ANO8Q9HCE9 1232 aaPredicted RBP18.67■□□□□ 0.58
CPSF7-201ENST00000340437 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.65■□□□□ 0.58
CPSF7-201ENST00000340437 GPRASP1Q5JY77 1395 aa18.65■□□□□ 0.58
CPSF7-201ENST00000340437 TRAK1Q9UPV9 953 aa18.65■□□□□ 0.58
CPSF7-201ENST00000340437 BLMP54132 1417 aaPredicted RBP18.65■□□□□ 0.58
CPSF7-201ENST00000340437 TRPM1Q7Z4N2 1603 aa18.64■□□□□ 0.58
CPSF7-201ENST00000340437 IGHDP01880 384 aa18.63■□□□□ 0.57
CPSF7-201ENST00000340437 SAFB2Q14151 953 aaKnown RBP eCLIP18.63■□□□□ 0.57
CPSF7-201ENST00000340437 FRAT2O75474 233 aaPredicted RBP18.63■□□□□ 0.57
CPSF7-201ENST00000340437 C8orf34Q49A92 452 aa18.63■□□□□ 0.57
CPSF7-201ENST00000340437 SLKQ9H2G2 1235 aaPredicted RBP18.63■□□□□ 0.57
CPSF7-201ENST00000340437 SPRYD3Q8NCJ5 442 aa18.62■□□□□ 0.57
CPSF7-201ENST00000340437 KDM2BQ8NHM5 1336 aa18.62■□□□□ 0.57
CPSF7-201ENST00000340437 MORC1Q86VD1 984 aa18.61■□□□□ 0.57
CPSF7-201ENST00000340437 USP35Q9P2H5 1018 aa18.61■□□□□ 0.57
CPSF7-201ENST00000340437 GSE1Q14687 1217 aa18.61■□□□□ 0.57
CPSF7-201ENST00000340437 TRAPPC8Q9Y2L5 1435 aa18.6■□□□□ 0.57
CPSF7-201ENST00000340437 TMEM132EQ6IEE7 984 aa18.6■□□□□ 0.57
CPSF7-201ENST00000340437 ADGRF5Q8IZF2 1346 aa18.6■□□□□ 0.57
CPSF7-201ENST00000340437 CARD14Q9BXL6 1004 aa18.59■□□□□ 0.57
CPSF7-201ENST00000340437 TNNQ9UQP3 1299 aa18.59■□□□□ 0.57
CPSF7-201ENST00000340437 ZMYM4Q5VZL5 1548 aa18.59■□□□□ 0.57
CPSF7-201ENST00000340437 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
CPSF7-201ENST00000340437 CDC42BPBQ9Y5S2 1711 aa18.59■□□□□ 0.57
CPSF7-201ENST00000340437 SLC12A5Q9H2X9 1139 aa18.58■□□□□ 0.57
CPSF7-201ENST00000340437 CENPJQ9HC77 1338 aaPredicted RBP18.58■□□□□ 0.57
CPSF7-201ENST00000340437 TTC37Q6PGP7 1564 aa18.58■□□□□ 0.56
CPSF7-201ENST00000340437 E9PSI1 815 aa18.58■□□□□ 0.56
CPSF7-201ENST00000340437 E9PCH4 1651 aa18.57■□□□□ 0.56
CPSF7-201ENST00000340437 WDR7Q9Y4E6 1490 aa18.57■□□□□ 0.56
CPSF7-201ENST00000340437 SEC24BO95487 1268 aa18.56■□□□□ 0.56
CPSF7-201ENST00000340437 GGT6Q6P531 493 aa18.56■□□□□ 0.56
CPSF7-201ENST00000340437 PRDM15P57071 1507 aaPredicted RBP18.56■□□□□ 0.56
CPSF7-201ENST00000340437 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.55■□□□□ 0.56
CPSF7-201ENST00000340437 ZNF521Q96K83 1311 aa18.54■□□□□ 0.56
CPSF7-201ENST00000340437 WWC1Q8IX03 1113 aa18.53■□□□□ 0.56
CPSF7-201ENST00000340437 KANK1Q14678 1352 aa18.52■□□□□ 0.55
CPSF7-201ENST00000340437 TCP11L2Q8N4U5 519 aa18.52■□□□□ 0.55
CPSF7-201ENST00000340437 EIF3AQ14152 1382 aaKnown RBP18.51■□□□□ 0.55
CPSF7-201ENST00000340437 PREX2Q70Z35 1606 aa18.51■□□□□ 0.55
CPSF7-201ENST00000340437 ERCC6L2Q5T890 1561 aa18.51■□□□□ 0.55
CPSF7-201ENST00000340437 SCAF11Q99590 1463 aaKnown RBP18.5■□□□□ 0.55
CPSF7-201ENST00000340437 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
CPSF7-201ENST00000340437 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.55
CPSF7-201ENST00000340437 EIF5BO60841 1220 aaKnown RBP18.5■□□□□ 0.55
CPSF7-201ENST00000340437 U2SURPO15042 1029 aaKnown RBP18.5■□□□□ 0.55
CPSF7-201ENST00000340437 SCAPERQ9BY12 1400 aa18.49■□□□□ 0.55
CPSF7-201ENST00000340437 MTHFSP49914 203 aa18.49■□□□□ 0.55
CPSF7-201ENST00000340437 DUOX2Q9NRD8 1548 aa18.49■□□□□ 0.55
CPSF7-201ENST00000340437 STK26Q9P289 416 aa18.48■□□□□ 0.55
CPSF7-201ENST00000340437 ASXL1Q8IXJ9 1541 aa18.48■□□□□ 0.55
CPSF7-201ENST00000340437 NKTRP30414 1462 aaKnown RBP18.48■□□□□ 0.55
CPSF7-201ENST00000340437 NPM1P06748 294 aaKnown RBP eCLIP18.46■□□□□ 0.55
CPSF7-201ENST00000340437 RLBP1P12271 317 aa18.46■□□□□ 0.55
CPSF7-201ENST00000340437 PLCH2O75038 1416 aa18.46■□□□□ 0.55
CPSF7-201ENST00000340437 PLEKHG5O94827 1062 aa18.46■□□□□ 0.55
CPSF7-201ENST00000340437 CGNL1Q0VF96 1302 aa18.46■□□□□ 0.54
CPSF7-201ENST00000340437 MYO5CQ9NQX4 1742 aa18.45■□□□□ 0.54
CPSF7-201ENST00000340437 FTSJ3Q8IY81 847 aaKnown RBP18.45■□□□□ 0.54
CPSF7-201ENST00000340437 TSR2Q969E8 191 aaKnown RBP18.45■□□□□ 0.54
CPSF7-201ENST00000340437 UPF2Q9HAU5 1272 aaKnown RBP18.45■□□□□ 0.54
CPSF7-201ENST00000340437 EIF2AK4Q9P2K8 1649 aaKnown RBP18.45■□□□□ 0.54
CPSF7-201ENST00000340437 PCDHB15Q9Y5E8 787 aa18.44■□□□□ 0.54
CPSF7-201ENST00000340437 TRMT2AQ8IZ69 625 aaKnown RBP18.44■□□□□ 0.54
CPSF7-201ENST00000340437 MAST1Q9Y2H9 1570 aa18.43■□□□□ 0.54
CPSF7-201ENST00000340437 RUNDC1Q96C34 613 aa18.43■□□□□ 0.54
CPSF7-201ENST00000340437 PDZRN3Q9UPQ7 1066 aa18.43■□□□□ 0.54
CPSF7-201ENST00000340437 UGGT1Q9NYU2 1555 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 RARSP54136 660 aaKnown RBP18.42■□□□□ 0.54
CPSF7-201ENST00000340437 BECN1Q14457 450 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 CFAP53Q96M91 514 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 CABP2Q9NPB3 220 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 UNC13BO14795 1591 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 ATP10AO60312 1499 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 GZF1Q9H116 711 aaPredicted RBP18.42■□□□□ 0.54
CPSF7-201ENST00000340437 POGKQ9P215 609 aa18.42■□□□□ 0.54
CPSF7-201ENST00000340437 NSD3Q9BZ95 1437 aa18.41■□□□□ 0.54
CPSF7-201ENST00000340437 PDE3AQ14432 1141 aa18.41■□□□□ 0.54
CPSF7-201ENST00000340437 MLECQ14165 292 aa18.41■□□□□ 0.54
CPSF7-201ENST00000340437 IQGAP3Q86VI3 1631 aa18.4■□□□□ 0.54
CPSF7-201ENST00000340437 PIK3C2GO75747 1445 aa18.4■□□□□ 0.54
CPSF7-201ENST00000340437 MFAP1P55081 439 aaKnown RBP18.39■□□□□ 0.54
CPSF7-201ENST00000340437 INSRP06213 1382 aa18.39■□□□□ 0.53
CPSF7-201ENST00000340437 STAG3Q9UJ98 1225 aa18.38■□□□□ 0.53
CPSF7-201ENST00000340437 GGNBP2Q9H3C7 697 aa18.38■□□□□ 0.53
CPSF7-201ENST00000340437 SRPK2P78362 688 aaKnown RBP18.37■□□□□ 0.53
CPSF7-201ENST00000340437 ITPRIPQ8IWB1 547 aa18.37■□□□□ 0.53
CPSF7-201ENST00000340437 SMC4Q9NTJ3 1288 aa18.37■□□□□ 0.53
CPSF7-201ENST00000340437 PMFBP1Q8TBY8 1022 aa18.37■□□□□ 0.53
CPSF7-201ENST00000340437 MAPK8IP3Q9UPT6 1336 aa18.36■□□□□ 0.53
CPSF7-201ENST00000340437 CFAP65Q6ZU64 1925 aaKnown RBP18.35■□□□□ 0.53
CPSF7-201ENST00000340437 RWDD1Q9H446 243 aaPredicted RBP18.35■□□□□ 0.53
CPSF7-201ENST00000340437 ABCC2Q92887 1545 aa18.35■□□□□ 0.53
CPSF7-201ENST00000340437 NOS1P29475 1434 aa18.35■□□□□ 0.53
CPSF7-201ENST00000340437 USP19O94966 1318 aa18.35■□□□□ 0.53
CPSF7-201ENST00000340437 EXOSC9Q06265 439 aaKnown RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms