RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C10orf71Q711Q0 1435 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 PPP4R3CPQ6ZMV5 832 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 EHBP1L1Q8N3D4 1523 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 PTCH1Q13635 1447 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 ROBO1Q9Y6N7 1651 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 POTEIP0CG38 1075 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 NRXN3Q9Y4C0 1643 aa3.39□□□□□ -1.87
LINC00643-201ENST00000334389 SCAF11Q99590 1463 aaKnown RBP3.38□□□□□ -1.87
LINC00643-201ENST00000334389 KIF1BO60333 1816 aa3.38□□□□□ -1.87
LINC00643-201ENST00000334389 BCL9LQ86UU0 1499 aa3.38□□□□□ -1.87
LINC00643-201ENST00000334389 CYB5RLQ6IPT4 315 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 CHMP7Q8WUX9 453 aaPredicted RBP3.37□□□□□ -1.87
LINC00643-201ENST00000334389 ALS2Q96Q42 1657 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 FYCO1Q9BQS8 1478 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 MAP3K5Q99683 1374 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 JPH4Q96JJ6 628 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 BCL9O00512 1426 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 IFT172Q9UG01 1749 aa3.37□□□□□ -1.87
LINC00643-201ENST00000334389 PARP4Q9UKK3 1724 aaKnown RBP3.36□□□□□ -1.87
LINC00643-201ENST00000334389 PARD3Q8TEW0 1356 aa3.36□□□□□ -1.87
LINC00643-201ENST00000334389 PITPNM1O00562 1244 aa3.36□□□□□ -1.87
LINC00643-201ENST00000334389 FMN1Q68DA7 1419 aa3.36□□□□□ -1.87
LINC00643-201ENST00000334389 SETD5Q9C0A6 1442 aa3.36□□□□□ -1.87
LINC00643-201ENST00000334389 PEAK1Q9H792 1746 aa3.36□□□□□ -1.87
LINC00643-201ENST00000334389 CCDC125Q86Z20 511 aa3.35□□□□□ -1.87
LINC00643-201ENST00000334389 DUOX1Q9NRD9 1551 aa3.35□□□□□ -1.87
LINC00643-201ENST00000334389 TDRD9Q8NDG6 1382 aaKnown RBP3.35□□□□□ -1.87
LINC00643-201ENST00000334389 PAPPAQ13219 1627 aa3.35□□□□□ -1.87
LINC00643-201ENST00000334389 PHRF1Q9P1Y6 1649 aaKnown RBP3.35□□□□□ -1.87
LINC00643-201ENST00000334389 ABCC5O15440 1437 aa3.35□□□□□ -1.87
LINC00643-201ENST00000334389 CDAN1Q8IWY9 1227 aa3.34□□□□□ -1.87
LINC00643-201ENST00000334389 CHD4Q14839 1912 aa3.34□□□□□ -1.87
LINC00643-201ENST00000334389 MMRN1Q13201 1228 aa3.34□□□□□ -1.87
LINC00643-201ENST00000334389 KIF13BQ9NQT8 1826 aa3.34□□□□□ -1.87
LINC00643-201ENST00000334389 ASXL1Q8IXJ9 1541 aa3.34□□□□□ -1.88
LINC00643-201ENST00000334389 CAMTA1Q9Y6Y1 1673 aa3.34□□□□□ -1.88
LINC00643-201ENST00000334389 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.34□□□□□ -1.88
LINC00643-201ENST00000334389 PLEKHG2Q9H7P9 1386 aa3.33□□□□□ -1.88
LINC00643-201ENST00000334389 NPM1P06748 294 aaKnown RBP eCLIP3.33□□□□□ -1.88
LINC00643-201ENST00000334389 ARHGAP35Q9NRY4 1499 aa3.33□□□□□ -1.88
LINC00643-201ENST00000334389 FAM208AQ9UK61 1670 aaKnown RBP3.33□□□□□ -1.88
LINC00643-201ENST00000334389 PPLO60437 1756 aa3.33□□□□□ -1.88
LINC00643-201ENST00000334389 C1orf167Q5SNV9 1468 aa3.33□□□□□ -1.88
LINC00643-201ENST00000334389 SAMD1Q6SPF0 538 aaPredicted RBP3.32□□□□□ -1.88
LINC00643-201ENST00000334389 RBBP6Q7Z6E9 1792 aaKnown RBP3.32□□□□□ -1.88
LINC00643-201ENST00000334389 SPATA31A6Q5VVP1 1343 aa3.32□□□□□ -1.88
LINC00643-201ENST00000334389 MYOM1P52179 1685 aa3.32□□□□□ -1.88
LINC00643-201ENST00000334389 RGPD8O14715 1765 aaPredicted RBP3.32□□□□□ -1.88
LINC00643-201ENST00000334389 RGPD5Q99666 1765 aa3.32□□□□□ -1.88
LINC00643-201ENST00000334389 TROQ12816 1431 aaPredicted RBP3.31□□□□□ -1.88
LINC00643-201ENST00000334389 TMEM94Q12767 1356 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 ARHGEF28Q8N1W1 1705 aaKnown RBP3.31□□□□□ -1.88
LINC00643-201ENST00000334389 FAM69CQ0P6D2 419 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 COL14A1Q05707 1796 aaKnown RBP3.31□□□□□ -1.88
LINC00643-201ENST00000334389 NOS1P29475 1434 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 ERBINQ96RT1 1412 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 MBD5Q9P267 1494 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 CLIP1P30622 1438 aa3.31□□□□□ -1.88
LINC00643-201ENST00000334389 ADGRL2O95490 1459 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 RRBP1Q9P2E9 1410 aaKnown RBP3.3□□□□□ -1.88
LINC00643-201ENST00000334389 TULP4Q9NRJ4 1543 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 TRPM3Q9HCF6 1732 aaPredicted RBP3.3□□□□□ -1.88
LINC00643-201ENST00000334389 BRWD3Q6RI45 1802 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 FMN2Q9NZ56 1722 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 LCE2DQ5TA82 110 aaPredicted RBP3.3□□□□□ -1.88
LINC00643-201ENST00000334389 ATRNO75882 1429 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 CEP162Q5TB80 1403 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 ITSN1Q15811 1721 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 CARMIL1Q5VZK9 1371 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 AATKQ6ZMQ8 1374 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 PIK3C2AO00443 1686 aa3.3□□□□□ -1.88
LINC00643-201ENST00000334389 ABCB7O75027 752 aa3.29□□□□□ -1.88
LINC00643-201ENST00000334389 ZC3H4Q9UPT8 1303 aaKnown RBP3.29□□□□□ -1.88
LINC00643-201ENST00000334389 TOPAZ1Q8N9V7 1692 aa3.29□□□□□ -1.88
LINC00643-201ENST00000334389 ADAMTS7Q9UKP4 1686 aa3.29□□□□□ -1.88
LINC00643-201ENST00000334389 IGSF5Q9NSI5 407 aa3.29□□□□□ -1.88
LINC00643-201ENST00000334389 CCDC144AA2RUR9 1427 aa3.28□□□□□ -1.88
LINC00643-201ENST00000334389 SMG6Q86US8 1419 aaKnown RBP3.28□□□□□ -1.88
LINC00643-201ENST00000334389 DCBLD2Q96PD2 775 aa3.28□□□□□ -1.88
LINC00643-201ENST00000334389 TNRC6CQ9HCJ0 1690 aaKnown RBP3.28□□□□□ -1.88
LINC00643-201ENST00000334389 CASKIN1Q8WXD9 1431 aa3.28□□□□□ -1.88
LINC00643-201ENST00000334389 TRHP20396 242 aaPredicted RBP3.28□□□□□ -1.88
LINC00643-201ENST00000334389 A2MP01023 1474 aa3.28□□□□□ -1.88
LINC00643-201ENST00000334389 NPHP4O75161 1426 aaPredicted RBP3.28□□□□□ -1.89
LINC00643-201ENST00000334389 ZFYVE9O95405 1425 aa3.28□□□□□ -1.89
LINC00643-201ENST00000334389 LMO7Q8WWI1 1683 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 NINLQ9Y2I6 1382 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 SLC34A2O95436 690 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 SPNS2Q8IVW8 549 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 HFM1A2PYH4 1435 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 ARFGEF2Q9Y6D5 1785 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 C11orf95C9JLR9 678 aaPredicted RBP3.27□□□□□ -1.89
LINC00643-201ENST00000334389 DLC1Q96QB1 1528 aa3.27□□□□□ -1.89
LINC00643-201ENST00000334389 AFDNP55196 1824 aaKnown RBP3.27□□□□□ -1.89
LINC00643-201ENST00000334389 PTPRUQ92729 1446 aa3.26□□□□□ -1.89
LINC00643-201ENST00000334389 NCBP3Q53F19 620 aaKnown RBP3.26□□□□□ -1.89
LINC00643-201ENST00000334389 SBF2Q86WG5 1849 aa3.26□□□□□ -1.89
LINC00643-201ENST00000334389 NHSQ6T4R5 1651 aa3.25□□□□□ -1.89
LINC00643-201ENST00000334389 ZNF579Q8NAF0 562 aaKnown RBP3.25□□□□□ -1.89
LINC00643-201ENST00000334389 SHANK3Q9BYB0 1731 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms