RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 RGS3P49796 1198 aa12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 NCBP3Q53F19 620 aaKnown RBP12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 ZNF518AQ6AHZ1 1483 aa12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 COG3Q96JB2 828 aa12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 SHANK2Q9UPX8 1470 aa12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 ADAMTS8Q9UP79 889 aa12.03□□□□□ -0.48
TMEM39A-201ENST00000319172 AMPHP49418 695 aa12.02□□□□□ -0.49
TMEM39A-201ENST00000319172 PPP2R1AP30153 589 aa12.02□□□□□ -0.49
TMEM39A-201ENST00000319172 PDE3BQ13370 1112 aa12.01□□□□□ -0.49
TMEM39A-201ENST00000319172 PLIN1O60240 522 aa12.01□□□□□ -0.49
TMEM39A-201ENST00000319172 MTHFSP49914 203 aa12.01□□□□□ -0.49
TMEM39A-201ENST00000319172 MYH16Q9H6N6 1097 aa12.01□□□□□ -0.49
TMEM39A-201ENST00000319172 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.01□□□□□ -0.493e-7■□□□□ 11.1
TMEM39A-201ENST00000319172 NOS1P29475 1434 aa12.01□□□□□ -0.49
TMEM39A-201ENST00000319172 CABP1Q9NZU7 370 aa12□□□□□ -0.49
TMEM39A-201ENST00000319172 WAPLQ7Z5K2 1190 aa12□□□□□ -0.49
TMEM39A-201ENST00000319172 ADGRL2O95490 1459 aa12□□□□□ -0.49
TMEM39A-201ENST00000319172 CDK19Q9BWU1 502 aa12□□□□□ -0.49
TMEM39A-201ENST00000319172 RTF1Q92541 710 aaKnown RBP12□□□□□ -0.49
TMEM39A-201ENST00000319172 CLUAP1Q96AJ1 413 aa12□□□□□ -0.49
TMEM39A-201ENST00000319172 MBD5Q9P267 1494 aa11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 BRD4O60885 1362 aaPredicted RBP11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 PNISRQ8TF01 805 aaKnown RBP11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 THEMISQ8N1K5 641 aaPredicted RBP11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 BCL2L13Q9BXK5 485 aa11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 UPF2Q9HAU5 1272 aaKnown RBP11.99□□□□□ -0.49
TMEM39A-201ENST00000319172 NUTM2GQ5VZR2 741 aa11.98□□□□□ -0.49
TMEM39A-201ENST00000319172 PMFBP1Q8TBY8 1022 aa11.97□□□□□ -0.49
TMEM39A-201ENST00000319172 KDM6BO15054 1643 aa11.97□□□□□ -0.49
TMEM39A-201ENST00000319172 CDCA7LQ96GN5 454 aa11.97□□□□□ -0.49
TMEM39A-201ENST00000319172 DIAPH1O60610 1272 aaKnown RBP11.97□□□□□ -0.49
TMEM39A-201ENST00000319172 ARXQ96QS3 562 aa11.97□□□□□ -0.49
TMEM39A-201ENST00000319172 RTEL1-TNFRSF6BF6WH68 1400 aa11.96□□□□□ -0.49
TMEM39A-201ENST00000319172 ELL2O00472 640 aaPredicted RBP11.96□□□□□ -0.49
TMEM39A-201ENST00000319172 DISP3Q9P2K9 1392 aa11.96□□□□□ -0.49
TMEM39A-201ENST00000319172 CSB-PGBD3P0DP91 1061 aa11.96□□□□□ -0.49
TMEM39A-201ENST00000319172 HMOX1P09601 288 aa11.95□□□□□ -0.5
TMEM39A-201ENST00000319172 POGZQ7Z3K3 1410 aa11.95□□□□□ -0.5
TMEM39A-201ENST00000319172 C14orf93Q9H972 538 aaKnown RBP11.95□□□□□ -0.5
TMEM39A-201ENST00000319172 SMC4Q9NTJ3 1288 aa11.95□□□□□ -0.5
TMEM39A-201ENST00000319172 PRAG1Q86YV5 1406 aa11.94□□□□□ -0.5
TMEM39A-201ENST00000319172 UHRF1BP1LA0JNW5 1464 aa11.94□□□□□ -0.5
TMEM39A-201ENST00000319172 TTC37Q6PGP7 1564 aa11.94□□□□□ -0.5
TMEM39A-201ENST00000319172 PSME1Q06323 249 aa11.93□□□□□ -0.5
TMEM39A-201ENST00000319172 EXOC6Q8TAG9 804 aa11.93□□□□□ -0.5
TMEM39A-201ENST00000319172 ATP7AQ04656 1500 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 MS4A1P11836 297 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 ERICH6BQ5W0A0 696 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 SAMD9LQ8IVG5 1584 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 E9PSI1 815 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 RRP1P56182 461 aaKnown RBP11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 CALD1Q05682 793 aaKnown RBP11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 RUNDC1Q96C34 613 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 RALGAPBQ86X10 1494 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 TEX14Q8IWB6 1497 aa11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 SCAF11Q99590 1463 aaKnown RBP11.92□□□□□ -0.5
TMEM39A-201ENST00000319172 RIPK4P57078 832 aa11.91□□□□□ -0.5
TMEM39A-201ENST00000319172 NLRP6P59044 892 aa11.91□□□□□ -0.5
TMEM39A-201ENST00000319172 ITPRIPQ8IWB1 547 aa11.91□□□□□ -0.5
TMEM39A-201ENST00000319172 RBM33Q96EV2 1170 aaKnown RBP11.91□□□□□ -0.5
TMEM39A-201ENST00000319172 TCP11L2Q8N4U5 519 aa11.91□□□□□ -0.5
TMEM39A-201ENST00000319172 NSD3Q9BZ95 1437 aa11.9□□□□□ -0.5
TMEM39A-201ENST00000319172 ANKLE2Q86XL3 938 aa11.9□□□□□ -0.5
TMEM39A-201ENST00000319172 TESK2Q96S53 571 aa11.9□□□□□ -0.5
TMEM39A-201ENST00000319172 TCERG1O14776 1098 aaKnown RBP11.9□□□□□ -0.51
TMEM39A-201ENST00000319172 HSP90AA1P07900 732 aaKnown RBP11.9□□□□□ -0.51
TMEM39A-201ENST00000319172 IPO8O15397 1037 aaKnown RBP11.89□□□□□ -0.51
TMEM39A-201ENST00000319172 PPP6R1Q9UPN7 881 aa11.89□□□□□ -0.51
TMEM39A-201ENST00000319172 EIF5BO60841 1220 aaKnown RBP11.89□□□□□ -0.51
TMEM39A-201ENST00000319172 NUDT16Q96DE0 195 aaKnown RBP11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 ZCCHC11Q5TAX3 1644 aaKnown RBP11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 ESCO1Q5FWF5 840 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 PROSER2Q86WR7 435 aaPredicted RBP11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 CRBNQ96SW2 442 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 GCC2Q8IWJ2 1684 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 ARHGEF12Q9NZN5 1544 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 ARHGEF5Q12774 1597 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 CCDC61Q9Y6R9 512 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 MYO5CQ9NQX4 1742 aa11.88□□□□□ -0.51
TMEM39A-201ENST00000319172 ATAD2Q6PL18 1390 aa11.87□□□□□ -0.51
TMEM39A-201ENST00000319172 LMOD3Q0VAK6 560 aa11.87□□□□□ -0.51
TMEM39A-201ENST00000319172 APBB1O00213 710 aa11.87□□□□□ -0.51
TMEM39A-201ENST00000319172 NBR1Q14596 966 aa11.87□□□□□ -0.51
TMEM39A-201ENST00000319172 ABTB2Q8N961 1025 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 COG6Q9Y2V7 657 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 CFAP65Q6ZU64 1925 aaKnown RBP11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 YEATS2Q9ULM3 1422 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 RBM19Q9Y4C8 960 aaKnown RBP11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 PRKAR2BP31323 418 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 RRS1Q15050 365 aaKnown RBP11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 AMOTL2Q9Y2J4 779 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 TNRQ92752 1358 aa11.86□□□□□ -0.51
TMEM39A-201ENST00000319172 ATF3P18847 181 aa11.85□□□□□ -0.51
TMEM39A-201ENST00000319172 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
TMEM39A-201ENST00000319172 CHMP4BQ9H444 224 aaKnown RBP11.84□□□□□ -0.51
TMEM39A-201ENST00000319172 SLC4A10Q6U841 1118 aa11.83□□□□□ -0.51
TMEM39A-201ENST00000319172 PREX2Q70Z35 1606 aa11.83□□□□□ -0.52
TMEM39A-201ENST00000319172 XPCQ01831 940 aaPredicted RBP11.83□□□□□ -0.52
TMEM39A-201ENST00000319172 MAST1Q9Y2H9 1570 aa11.83□□□□□ -0.52
TMEM39A-201ENST00000319172 NME9Q86XW9 330 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms