RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TMEM2Q9UHN6 1383 aa26.21■■□□□ 1.79
HMGA1-201ENST00000311487 NCKAP5LQ9HCH0 1330 aa26.21■■□□□ 1.79
HMGA1-201ENST00000311487 PPP1R15AO75807 674 aaPredicted RBP26.2■■□□□ 1.79
HMGA1-201ENST00000311487 RIMS2Q9UQ26 1411 aa26.2■■□□□ 1.78
HMGA1-201ENST00000311487 ZEB1P37275 1124 aaPredicted RBP26.18■■□□□ 1.78
HMGA1-201ENST00000311487 BCANQ96GW7 911 aa26.18■■□□□ 1.78
HMGA1-201ENST00000311487 ADGRF5Q8IZF2 1346 aa26.18■■□□□ 1.78
HMGA1-201ENST00000311487 EID1Q9Y6B2 187 aa26.15■■□□□ 1.78
HMGA1-201ENST00000311487 NEXMIFQ5QGS0 1516 aa26.15■■□□□ 1.78
HMGA1-201ENST00000311487 ANKLE2Q86XL3 938 aa26.14■■□□□ 1.78
HMGA1-201ENST00000311487 ZFYVE9O95405 1425 aa26.14■■□□□ 1.78
HMGA1-201ENST00000311487 RPGRIP1LQ68CZ1 1315 aa26.11■■□□□ 1.77
HMGA1-201ENST00000311487 KDM5AP29375 1690 aaKnown RBP26.11■■□□□ 1.77
HMGA1-201ENST00000311487 VGFO15240 615 aaPredicted RBP26.1■■□□□ 1.77
HMGA1-201ENST00000311487 SLIT1O75093 1534 aa26.1■■□□□ 1.77
HMGA1-201ENST00000311487 ARHGAP23Q9P227 1491 aa26.1■■□□□ 1.77
HMGA1-201ENST00000311487 PPLO60437 1756 aa26.1■■□□□ 1.77
HMGA1-201ENST00000311487 SLC26A8Q96RN1 970 aa26.09■■□□□ 1.77
HMGA1-201ENST00000311487 NBPF8Q3BBV2 869 aa26.08■■□□□ 1.77
HMGA1-201ENST00000311487 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.08■■□□□ 1.77
HMGA1-201ENST00000311487 HDGFP51858 240 aaKnown RBP26.08■■□□□ 1.76
HMGA1-201ENST00000311487 SCAF11Q99590 1463 aaKnown RBP26.07■■□□□ 1.76
HMGA1-201ENST00000311487 NEURL4Q96JN8 1562 aa26.06■■□□□ 1.76
HMGA1-201ENST00000311487 IFT172Q9UG01 1749 aa26.05■■□□□ 1.76
HMGA1-201ENST00000311487 CFAP70Q5T0N1 1121 aa26.04■■□□□ 1.76
HMGA1-201ENST00000311487 STRCQ7RTU9 1775 aa26.01■■□□□ 1.75
HMGA1-201ENST00000311487 TMEM132EQ6IEE7 984 aa26■■□□□ 1.75
HMGA1-201ENST00000311487 NBPF1Q3BBV0 1214 aa25.99■■□□□ 1.75
HMGA1-201ENST00000311487 TIMELESSQ9UNS1 1208 aa25.99■■□□□ 1.75
HMGA1-201ENST00000311487 PRAG1Q86YV5 1406 aa25.99■■□□□ 1.75
HMGA1-201ENST00000311487 MYOM2P54296 1465 aa25.98■■□□□ 1.75
HMGA1-201ENST00000311487 NPHP4O75161 1426 aaPredicted RBP25.98■■□□□ 1.75
HMGA1-201ENST00000311487 PLEKHG1Q9ULL1 1385 aa25.98■■□□□ 1.75
HMGA1-201ENST00000311487 POLR1AO95602 1720 aaPredicted RBP25.97■■□□□ 1.75
HMGA1-201ENST00000311487 PIK3C2GO75747 1445 aa25.97■■□□□ 1.75
HMGA1-201ENST00000311487 IQGAP1P46940 1657 aa25.95■■□□□ 1.75
HMGA1-201ENST00000311487 NRXN1Q9ULB1 1477 aa25.94■■□□□ 1.74
HMGA1-201ENST00000311487 NRXN3Q9Y4C0 1643 aa25.93■■□□□ 1.74
HMGA1-201ENST00000311487 ADAMTS13Q76LX8 1427 aa25.93■■□□□ 1.74
HMGA1-201ENST00000311487 C14orf93Q9H972 538 aaKnown RBP25.92■■□□□ 1.74
HMGA1-201ENST00000311487 STK26Q9P289 416 aa25.92■■□□□ 1.74
HMGA1-201ENST00000311487 METP08581 1390 aa25.92■■□□□ 1.74
HMGA1-201ENST00000311487 ALKQ9UM73 1620 aa25.91■■□□□ 1.74
HMGA1-201ENST00000311487 STAC3Q96MF2 364 aa25.9■■□□□ 1.74
HMGA1-201ENST00000311487 MED14O60244 1454 aa25.9■■□□□ 1.74
HMGA1-201ENST00000311487 SETBP1Q9Y6X0 1596 aa25.88■■□□□ 1.73
HMGA1-201ENST00000311487 ROCK2O75116 1388 aaKnown RBP25.87■■□□□ 1.73
HMGA1-201ENST00000311487 TBX22Q9Y458 520 aa25.85■■□□□ 1.73
HMGA1-201ENST00000311487 RBM33Q96EV2 1170 aaKnown RBP25.84■■□□□ 1.73
HMGA1-201ENST00000311487 CARD11Q9BXL7 1154 aa25.83■■□□□ 1.73
HMGA1-201ENST00000311487 TRAK1Q9UPV9 953 aa25.83■■□□□ 1.73
HMGA1-201ENST00000311487 TRPM1Q7Z4N2 1603 aa25.83■■□□□ 1.73
HMGA1-201ENST00000311487 ZNF335Q9H4Z2 1342 aaPredicted RBP25.82■■□□□ 1.72
HMGA1-201ENST00000311487 ASXL1Q8IXJ9 1541 aa25.82■■□□□ 1.72
HMGA1-201ENST00000311487 AMOTL2Q9Y2J4 779 aa25.81■■□□□ 1.72
HMGA1-201ENST00000311487 PTPRUQ92729 1446 aa25.81■■□□□ 1.72
HMGA1-201ENST00000311487 DMRT2Q9Y5R5 561 aa25.8■■□□□ 1.72
HMGA1-201ENST00000311487 SETD1AO15047 1707 aaKnown RBP25.8■■□□□ 1.72
HMGA1-201ENST00000311487 HIRIP3Q9BW71 556 aaPredicted RBP25.79■■□□□ 1.72
HMGA1-201ENST00000311487 SAFB2Q14151 953 aaKnown RBP eCLIP25.78■■□□□ 1.72
HMGA1-201ENST00000311487 KCNA6P17658 529 aa25.78■■□□□ 1.72
HMGA1-201ENST00000311487 RALGAPBQ86X10 1494 aa25.77■■□□□ 1.72
HMGA1-201ENST00000311487 ADGRB1O14514 1584 aa25.77■■□□□ 1.72
HMGA1-201ENST00000311487 YTHDC2Q9H6S0 1430 aaKnown RBP25.76■■□□□ 1.71
HMGA1-201ENST00000311487 WAPLQ7Z5K2 1190 aa25.75■■□□□ 1.71
HMGA1-201ENST00000311487 LAMC1P11047 1609 aa25.73■■□□□ 1.71
HMGA1-201ENST00000311487 DIP2AQ14689 1571 aa25.73■■□□□ 1.71
HMGA1-201ENST00000311487 KIAA1210Q9ULL0 1709 aa25.72■■□□□ 1.71
HMGA1-201ENST00000311487 ROBO2Q9HCK4 1378 aa25.7■■□□□ 1.71
HMGA1-201ENST00000311487 PRAM1Q96QH2 718 aa25.7■■□□□ 1.7
HMGA1-201ENST00000311487 LRPPRCP42704 1394 aaKnown RBP25.7■■□□□ 1.7
HMGA1-201ENST00000311487 STRCP1A6NGW2 1772 aa25.7■■□□□ 1.7
HMGA1-201ENST00000311487 PLEKHH1Q9ULM0 1364 aa25.69■■□□□ 1.7
HMGA1-201ENST00000311487 CHD2O14647 1828 aaKnown RBP25.68■■□□□ 1.7
HMGA1-201ENST00000311487 GPRASP1Q5JY77 1395 aa25.68■■□□□ 1.7
HMGA1-201ENST00000311487 PROSER2Q86WR7 435 aaPredicted RBP25.67■■□□□ 1.7
HMGA1-201ENST00000311487 POGKQ9P215 609 aa25.67■■□□□ 1.7
HMGA1-201ENST00000311487 USP47Q96K76 1375 aa25.65■■□□□ 1.7
HMGA1-201ENST00000311487 ST20-MTHFSA0A0A6YYL1 179 aa25.65■■□□□ 1.7
HMGA1-201ENST00000311487 ABCC11Q96J66 1382 aa25.65■■□□□ 1.7
HMGA1-201ENST00000311487 PIK3R4Q99570 1358 aa25.65■■□□□ 1.7
HMGA1-201ENST00000311487 HSPA5P11021 654 aaKnown RBP25.63■■□□□ 1.69
HMGA1-201ENST00000311487 MINK1Q8N4C8 1332 aaPredicted RBP25.61■■□□□ 1.69
HMGA1-201ENST00000311487 XRN1Q8IZH2 1706 aaKnown RBP25.61■■□□□ 1.69
HMGA1-201ENST00000311487 C14orf37Q86TY3 774 aa25.61■■□□□ 1.69
HMGA1-201ENST00000311487 EIF4G2P78344 907 aaKnown RBP eCLIP25.6■■□□□ 1.69
HMGA1-201ENST00000311487 ARHGEF28Q8N1W1 1705 aaKnown RBP25.58■■□□□ 1.69
HMGA1-201ENST00000311487 CENPJQ9HC77 1338 aaPredicted RBP25.58■■□□□ 1.68
HMGA1-201ENST00000311487 TMEM94Q12767 1356 aa25.57■■□□□ 1.68
HMGA1-201ENST00000311487 TECPR2O15040 1411 aa25.57■■□□□ 1.68
HMGA1-201ENST00000311487 NWD1Q149M9 1564 aa25.57■■□□□ 1.68
HMGA1-201ENST00000311487 NUTM2FA1L443 756 aa25.55■■□□□ 1.68
HMGA1-201ENST00000311487 CPS1P31327 1500 aa25.54■■□□□ 1.68
HMGA1-201ENST00000311487 EIF3AQ14152 1382 aaKnown RBP25.54■■□□□ 1.68
HMGA1-201ENST00000311487 PTCH1Q13635 1447 aa25.54■■□□□ 1.68
HMGA1-201ENST00000311487 LRRC7Q96NW7 1537 aa25.53■■□□□ 1.68
HMGA1-201ENST00000311487 KNDC1Q76NI1 1749 aa25.53■■□□□ 1.68
HMGA1-201ENST00000311487 LTBP4Q8N2S1 1624 aa25.52■■□□□ 1.68
HMGA1-201ENST00000311487 DLC1Q96QB1 1528 aa25.51■■□□□ 1.67
HMGA1-201ENST00000311487 TESK2Q96S53 571 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms