RNA–Protein interactions for RNA: ENST00000309017.7

PTPN7-201, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPN7, Length 3,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-201ENST00000309017 FAM43AQ8N2R8 423 aa14.28□□□□□ -0.12
PTPN7-201ENST00000309017 GZF1Q9H116 711 aaPredicted RBP14.28□□□□□ -0.12
PTPN7-201ENST00000309017 AMER1Q5JTC6 1135 aaPredicted RBP14.28□□□□□ -0.12
PTPN7-201ENST00000309017 RSPH6AQ9H0K4 717 aa14.28□□□□□ -0.12
PTPN7-201ENST00000309017 CCDC141Q6ZP82 1450 aa14.28□□□□□ -0.12
PTPN7-201ENST00000309017 EIF3AQ14152 1382 aaKnown RBP14.28□□□□□ -0.12
PTPN7-201ENST00000309017 SEC24BO95487 1268 aa14.27□□□□□ -0.12
PTPN7-201ENST00000309017 L1TD1Q5T7N2 865 aaKnown RBP14.27□□□□□ -0.12
PTPN7-201ENST00000309017 BCL2L13Q9BXK5 485 aa14.27□□□□□ -0.13
PTPN7-201ENST00000309017 RRP7AQ9Y3A4 280 aaKnown RBP14.27□□□□□ -0.13
PTPN7-201ENST00000309017 PTPRGP23470 1445 aa14.27□□□□□ -0.13
PTPN7-201ENST00000309017 ATP10BO94823 1461 aa14.26□□□□□ -0.13
PTPN7-201ENST00000309017 TRPM1Q7Z4N2 1603 aa14.25□□□□□ -0.13
PTPN7-201ENST00000309017 NKTRP30414 1462 aaKnown RBP14.25□□□□□ -0.13
PTPN7-201ENST00000309017 ZNF521Q96K83 1311 aa14.24□□□□□ -0.13
PTPN7-201ENST00000309017 MAGI2Q86UL8 1455 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 PDE3AQ14432 1141 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 CDC42BPAQ5VT25 1732 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 ABCC10Q5T3U5 1492 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 PMFBP1Q8TBY8 1022 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 DMRT2Q9Y5R5 561 aa14.23□□□□□ -0.13
PTPN7-201ENST00000309017 NAP1L5Q96NT1 182 aaPredicted RBP14.22□□□□□ -0.13
PTPN7-201ENST00000309017 PLA2R1Q13018 1463 aa14.22□□□□□ -0.13
PTPN7-201ENST00000309017 EIF4G3O43432 1585 aaKnown RBP14.21□□□□□ -0.13
PTPN7-201ENST00000309017 ADCY10Q96PN6 1610 aa14.21□□□□□ -0.13
PTPN7-201ENST00000309017 GOLGA6L3A6NEY3 463 aa14.21□□□□□ -0.13
PTPN7-201ENST00000309017 SYNJ2O15056 1496 aa14.21□□□□□ -0.14
PTPN7-201ENST00000309017 PRDM15P57071 1507 aaPredicted RBP14.2□□□□□ -0.14
PTPN7-201ENST00000309017 ARHGAP5Q13017 1502 aa14.2□□□□□ -0.14
PTPN7-201ENST00000309017 MFAP1P55081 439 aaKnown RBP14.19□□□□□ -0.14
PTPN7-201ENST00000309017 FTSJ3Q8IY81 847 aaKnown RBP14.19□□□□□ -0.14
PTPN7-201ENST00000309017 MORC1Q86VD1 984 aa14.19□□□□□ -0.14
PTPN7-201ENST00000309017 PDZRN3Q9UPQ7 1066 aa14.19□□□□□ -0.14
PTPN7-201ENST00000309017 USP19O94966 1318 aa14.19□□□□□ -0.14
PTPN7-201ENST00000309017 WWC1Q8IX03 1113 aa14.19□□□□□ -0.14
PTPN7-201ENST00000309017 UBE2Q2Q8WVN8 375 aa14.19□□□□□ -0.14
PTPN7-201ENST00000309017 RWDD1Q9H446 243 aaPredicted RBP14.19□□□□□ -0.14
PTPN7-201ENST00000309017 CHGAP10645 457 aaKnown RBP14.18□□□□□ -0.14
PTPN7-201ENST00000309017 WDR7Q9Y4E6 1490 aa14.18□□□□□ -0.14
PTPN7-201ENST00000309017 ASXL1Q8IXJ9 1541 aa14.18□□□□□ -0.14
PTPN7-201ENST00000309017 NUP160Q12769 1436 aa14.17□□□□□ -0.14
PTPN7-201ENST00000309017 EIF2AK4Q9P2K8 1649 aaKnown RBP14.17□□□□□ -0.14
PTPN7-201ENST00000309017 TRMT2AQ8IZ69 625 aaKnown RBP14.17□□□□□ -0.14
PTPN7-201ENST00000309017 TBC1D2Q9BYX2 928 aa14.17□□□□□ -0.14
PTPN7-201ENST00000309017 SYCP2Q9BX26 1530 aa14.17□□□□□ -0.14
PTPN7-201ENST00000309017 PNNQ9H307 717 aaKnown RBP14.17□□□□□ -0.14
PTPN7-201ENST00000309017 PIK3C2GO75747 1445 aa14.16□□□□□ -0.14
PTPN7-201ENST00000309017 TNNQ9UQP3 1299 aa14.16□□□□□ -0.14
PTPN7-201ENST00000309017 NGEFQ8N5V2 710 aa14.15□□□□□ -0.14
PTPN7-201ENST00000309017 RRAGDQ9NQL2 400 aaPredicted RBP14.15□□□□□ -0.14
PTPN7-201ENST00000309017 PCDHB15Q9Y5E8 787 aa14.15□□□□□ -0.14
PTPN7-201ENST00000309017 CFAP70Q5T0N1 1121 aa14.15□□□□□ -0.14
PTPN7-201ENST00000309017 ARHGEF5Q12774 1597 aa14.14□□□□□ -0.15
PTPN7-201ENST00000309017 TCP11L2Q8N4U5 519 aa14.14□□□□□ -0.15
PTPN7-201ENST00000309017 TBC1D32Q96NH3 1257 aa14.14□□□□□ -0.15
PTPN7-201ENST00000309017 RARSP54136 660 aaKnown RBP14.13□□□□□ -0.15
PTPN7-201ENST00000309017 HSP90AA1P07900 732 aaKnown RBP14.13□□□□□ -0.15
PTPN7-201ENST00000309017 HSCBQ8IWL3 235 aa14.13□□□□□ -0.15
PTPN7-201ENST00000309017 SCAF11Q99590 1463 aaKnown RBP14.13□□□□□ -0.15
PTPN7-201ENST00000309017 NINLQ9Y2I6 1382 aa14.13□□□□□ -0.15
PTPN7-201ENST00000309017 RLBP1P12271 317 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 CFAP53Q96M91 514 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 SAMD9LQ8IVG5 1584 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 MCM4P33991 863 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 RUNDC1Q96C34 613 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 C22orf23Q9BZE7 217 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 EFCAB2Q5VUJ9 269 aa14.12□□□□□ -0.15
PTPN7-201ENST00000309017 GLIPR1L2Q4G1C9 344 aa14.11□□□□□ -0.15
PTPN7-201ENST00000309017 ABCA8O94911 1581 aa14.11□□□□□ -0.15
PTPN7-201ENST00000309017 PANK2Q9BZ23 570 aa14.11□□□□□ -0.15
PTPN7-201ENST00000309017 CHMP5Q9NZZ3 219 aa14.11□□□□□ -0.15
PTPN7-201ENST00000309017 SLC24A1O60721 1099 aa14.11□□□□□ -0.15
PTPN7-201ENST00000309017 XRCC6P12956 609 aaKnown RBP eCLIP14.11□□□□□ -0.15
PTPN7-201ENST00000309017 TRAK2O60296 914 aa14.1□□□□□ -0.15
PTPN7-201ENST00000309017 U2AF1L5P0DN76 240 aaPredicted RBP14.1□□□□□ -0.15
PTPN7-201ENST00000309017 U2AF1Q01081 240 aaKnown RBP eCLIP14.1□□□□□ -0.15
PTPN7-201ENST00000309017 CARD14Q9BXL6 1004 aa14.1□□□□□ -0.15
PTPN7-201ENST00000309017 MYH16Q9H6N6 1097 aa14.1□□□□□ -0.15
PTPN7-201ENST00000309017 SPAG9O60271 1321 aaKnown RBP14.1□□□□□ -0.15
PTPN7-201ENST00000309017 ITPRIPQ8IWB1 547 aa14.1□□□□□ -0.15
PTPN7-201ENST00000309017 TRIM44Q96DX7 344 aaPredicted RBP14.1□□□□□ -0.15
PTPN7-201ENST00000309017 SMC4Q9NTJ3 1288 aa14.09□□□□□ -0.15
PTPN7-201ENST00000309017 ANTXR1Q9H6X2 564 aa14.09□□□□□ -0.15
PTPN7-201ENST00000309017 ZKSCAN2Q63HK3 967 aa14.08□□□□□ -0.15
PTPN7-201ENST00000309017 TRAK1Q9UPV9 953 aa14.08□□□□□ -0.15
PTPN7-201ENST00000309017 DZIP1LQ8IYY4 767 aaKnown RBP14.08□□□□□ -0.16
PTPN7-201ENST00000309017 LAMC1P11047 1609 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 U2SURPO15042 1029 aaKnown RBP14.07□□□□□ -0.16
PTPN7-201ENST00000309017 KIF3BO15066 747 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 MTHFSP49914 203 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 AAMPQ13685 434 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 AFAP1Q8N556 730 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 HSP90AB1P08238 724 aaKnown RBP14.07□□□□□ -0.16
PTPN7-201ENST00000309017 NPC1L1Q9UHC9 1359 aa14.07□□□□□ -0.16
PTPN7-201ENST00000309017 MYO5CQ9NQX4 1742 aa14.06□□□□□ -0.16
PTPN7-201ENST00000309017 SLC12A5Q9H2X9 1139 aa14.06□□□□□ -0.16
PTPN7-201ENST00000309017 ABCC2Q92887 1545 aa14.06□□□□□ -0.16
PTPN7-201ENST00000309017 STAC3Q96MF2 364 aa14.06□□□□□ -0.16
PTPN7-201ENST00000309017 SENP3Q9H4L4 574 aaPredicted RBP14.06□□□□□ -0.16
PTPN7-201ENST00000309017 MVPQ14764 893 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms