RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.87□□□□□ -1.15
CD44-202ENST00000278385 FAM161AQ3B820 660 aa7.86□□□□□ -1.15
CD44-202ENST00000278385 METTL3Q86U44 580 aaKnown RBP7.86□□□□□ -1.15
CD44-202ENST00000278385 SLF2Q8IX21 1173 aa7.86□□□□□ -1.15
CD44-202ENST00000278385 CCDC102AQ96A19 550 aa7.86□□□□□ -1.15
CD44-202ENST00000278385 RNF166Q96A37 237 aaPredicted RBP7.86□□□□□ -1.15
CD44-202ENST00000278385 FAM198AQ9UFP1 575 aa7.86□□□□□ -1.15
CD44-202ENST00000278385 RCCD1A6NED2 376 aa7.85□□□□□ -1.15
CD44-202ENST00000278385 PXYLP1Q8TE99 480 aa7.85□□□□□ -1.15
CD44-202ENST00000278385 EYA1Q99502 592 aa7.85□□□□□ -1.15
CD44-202ENST00000278385 PPP4CP60510 307 aa7.84□□□□□ -1.15
CD44-202ENST00000278385 TTLL12Q14166 644 aaPredicted RBP7.84□□□□□ -1.15
CD44-202ENST00000278385 SULF1Q8IWU6 871 aa7.84□□□□□ -1.15
CD44-202ENST00000278385 TTBK1Q5TCY1 1321 aaPredicted RBP7.83□□□□□ -1.16
CD44-202ENST00000278385 CLCN1P35523 988 aa7.83□□□□□ -1.16
CD44-202ENST00000278385 SAMD7Q7Z3H4 446 aa7.83□□□□□ -1.16
CD44-202ENST00000278385 SLC24A3Q9HC58 644 aa7.83□□□□□ -1.16
CD44-202ENST00000278385 PRR14Q9BWN1 585 aa7.82□□□□□ -1.16
CD44-202ENST00000278385 SOWAHBA6NEL2 793 aa7.81□□□□□ -1.16
CD44-202ENST00000278385 PTPN5P54829 565 aa7.81□□□□□ -1.16
CD44-202ENST00000278385 SWT1Q5T5J6 900 aaKnown RBP7.81□□□□□ -1.16
CD44-202ENST00000278385 TMEM134Q9H6X4 195 aa7.81□□□□□ -1.16
CD44-202ENST00000278385 HCSTQ9UBK5 93 aa7.81□□□□□ -1.16
CD44-202ENST00000278385 NPM2Q86SE8 214 aaKnown RBP7.8□□□□□ -1.16
CD44-202ENST00000278385 RDH13Q8NBN7 331 aa7.8□□□□□ -1.16
CD44-202ENST00000278385 PLSCR2Q9NRY7 297 aa7.8□□□□□ -1.16
CD44-202ENST00000278385 TSR3Q9UJK0 312 aaKnown RBP7.8□□□□□ -1.16
CD44-202ENST00000278385 HPS5Q9UPZ3 1129 aa7.8□□□□□ -1.16
CD44-202ENST00000278385 MDM2Q00987 491 aaPredicted RBP7.79□□□□□ -1.16
CD44-202ENST00000278385 MMRN1Q13201 1228 aa7.79□□□□□ -1.16
CD44-202ENST00000278385 THSD4Q6ZMP0 1018 aa7.79□□□□□ -1.16
CD44-202ENST00000278385 NYAP1Q6ZVC0 841 aa7.79□□□□□ -1.16
CD44-202ENST00000278385 GPCPD1Q9NPB8 672 aa7.79□□□□□ -1.16
CD44-202ENST00000278385 DDX11L8A8MPP1 907 aa7.78□□□□□ -1.16
CD44-202ENST00000278385 BCAMP50895 628 aa7.78□□□□□ -1.16
CD44-202ENST00000278385 KMT5BQ4FZB7 885 aa7.78□□□□□ -1.16
CD44-202ENST00000278385 TRIM66O15016 1216 aa7.77□□□□□ -1.17
CD44-202ENST00000278385 C3orf80F5H4A9 247 aa7.76□□□□□ -1.17
CD44-202ENST00000278385 AMHR2Q16671 573 aa7.76□□□□□ -1.17
CD44-202ENST00000278385 SUPT5HO00267 1087 aaKnown RBP7.74□□□□□ -1.17
CD44-202ENST00000278385 MYT1Q01538 1121 aa7.74□□□□□ -1.17
CD44-202ENST00000278385 PDE4DQ08499 809 aa7.74□□□□□ -1.17
CD44-202ENST00000278385 GRIPAP1Q4V328 841 aa7.74□□□□□ -1.17
CD44-202ENST00000278385 NLRP7Q8WX94 980 aa7.74□□□□□ -1.17
CD44-202ENST00000278385 NEUROD2Q15784 382 aa7.72□□□□□ -1.17
CD44-202ENST00000278385 NUTM1Q86Y26 1132 aa7.72□□□□□ -1.17
CD44-202ENST00000278385 PHOX2BQ99453 314 aa7.72□□□□□ -1.17
CD44-202ENST00000278385 WBP1LQ9NX94 342 aa7.72□□□□□ -1.17
CD44-202ENST00000278385 CFHP08603 1231 aa7.71□□□□□ -1.18
CD44-202ENST00000278385 SSTR3P32745 418 aaPredicted RBP7.71□□□□□ -1.18
CD44-202ENST00000278385 DIXDC1Q155Q3 683 aa7.71□□□□□ -1.18
CD44-202ENST00000278385 GIGYF2Q6Y7W6 1299 aaKnown RBP7.71□□□□□ -1.18
CD44-202ENST00000278385 TRIM26Q12899 539 aaPredicted RBP7.7□□□□□ -1.18
CD44-202ENST00000278385 ATP1B4Q9UN42 357 aaPredicted RBP7.7□□□□□ -1.18
CD44-202ENST00000278385 PARP9Q8IXQ6 854 aa7.69□□□□□ -1.18
CD44-202ENST00000278385 FAM217BQ9NTX9 383 aaPredicted RBP7.69□□□□□ -1.18
CD44-202ENST00000278385 PCDHB3Q9Y5E6 796 aa7.68□□□□□ -1.18
CD44-202ENST00000278385 USP46P62068 366 aa7.67□□□□□ -1.18
CD44-202ENST00000278385 ACTN4O43707 911 aaKnown RBP7.66□□□□□ -1.18
CD44-202ENST00000278385 KDM4AO75164 1064 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 NR1I2O75469 434 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 CD46P15529 392 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 GCGRP47871 477 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 DDRGK1Q96HY6 314 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 BEGAINQ9BUH8 593 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 RSPH6AQ9H0K4 717 aa7.66□□□□□ -1.18
CD44-202ENST00000278385 SLC10A3P09131 477 aa7.65□□□□□ -1.18
CD44-202ENST00000278385 UBTFP17480 764 aaKnown RBP7.65□□□□□ -1.18
CD44-202ENST00000278385 ATP6V1AP38606 617 aa7.65□□□□□ -1.18
CD44-202ENST00000278385 KDM4CQ9H3R0 1056 aa7.65□□□□□ -1.18
CD44-202ENST00000278385 APLP1P51693 650 aa7.64□□□□□ -1.19
CD44-202ENST00000278385 TMUB1Q9BVT8 246 aa7.64□□□□□ -1.19
CD44-202ENST00000278385 KCNC4Q03721 635 aa7.63□□□□□ -1.19
CD44-202ENST00000278385 IL21Q9HBE4 155 aa7.63□□□□□ -1.19
CD44-202ENST00000278385 HRCP23327 699 aa7.62□□□□□ -1.19
CD44-202ENST00000278385 COPS2P61201 443 aa7.62□□□□□ -1.19
CD44-202ENST00000278385 Q3C1V9 767 aa7.62□□□□□ -1.19
CD44-202ENST00000278385 REPIN1Q9BWE0 567 aaKnown RBP7.62□□□□□ -1.19
CD44-202ENST00000278385 GPBP1L1Q9HC44 474 aaPredicted RBP7.62□□□□□ -1.19
CD44-202ENST00000278385 FUT2Q10981 343 aa7.61□□□□□ -1.19
CD44-202ENST00000278385 RB1CC1Q8TDY2 1594 aa7.61□□□□□ -1.19
CD44-202ENST00000278385 NACADO15069 1562 aa7.6□□□□□ -1.19
CD44-202ENST00000278385 MS4A1P11836 297 aa7.6□□□□□ -1.19
CD44-202ENST00000278385 MTRQ99707 1265 aa7.6□□□□□ -1.19
CD44-202ENST00000278385 GGCXP38435 758 aa7.59□□□□□ -1.19
CD44-202ENST00000278385 PLA2G2EQ9NZK7 142 aa7.59□□□□□ -1.19
CD44-202ENST00000278385 FMNL1O95466 1100 aaPredicted RBP7.58□□□□□ -1.2
CD44-202ENST00000278385 BRPF1P55201 1214 aaPredicted RBP7.58□□□□□ -1.2
CD44-202ENST00000278385 PUS10Q3MIT2 529 aaKnown RBP7.58□□□□□ -1.2
CD44-202ENST00000278385 BLOC1S3Q6QNY0 202 aa7.58□□□□□ -1.2
CD44-202ENST00000278385 TBC1D2Q9BYX2 928 aa7.58□□□□□ -1.2
CD44-202ENST00000278385 SCUBE3Q8IX30 993 aa7.57□□□□□ -1.2
CD44-202ENST00000278385 SPIRE2Q8WWL2 714 aa7.57□□□□□ -1.2
CD44-202ENST00000278385 HOXA2O43364 376 aa7.56□□□□□ -1.2
CD44-202ENST00000278385 ZPR1O75312 459 aa7.56□□□□□ -1.2
CD44-202ENST00000278385 FDX1P10109 184 aa7.56□□□□□ -1.2
CD44-202ENST00000278385 MORN1Q5T089 497 aa7.56□□□□□ -1.2
CD44-202ENST00000278385 IL27Q8NEV9 243 aa7.56□□□□□ -1.2
CD44-202ENST00000278385 ITGBL1O95965 494 aaPredicted RBP7.55□□□□□ -1.2
CD44-202ENST00000278385 FAM117AQ9C073 453 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms