RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 NEXMIFQ5QGS0 1516 aa32.25■■■□□ 2.75
SMARCB1-201ENST00000263121 MYO5BQ9ULV0 1848 aa32.24■■■□□ 2.75
SMARCB1-201ENST00000263121 NBPF1Q3BBV0 1214 aa32.24■■■□□ 2.75
SMARCB1-201ENST00000263121 ADGRF5Q8IZF2 1346 aa32.22■■■□□ 2.75
SMARCB1-201ENST00000263121 C3P01024 1663 aa32.18■■■□□ 2.74
SMARCB1-201ENST00000263121 TNRQ92752 1358 aa32.16■■■□□ 2.74
SMARCB1-201ENST00000263121 PIK3C2GO75747 1445 aa32.16■■■□□ 2.74
SMARCB1-201ENST00000263121 POLR1AO95602 1720 aaPredicted RBP32.15■■■□□ 2.74
SMARCB1-201ENST00000263121 ZFYVE9O95405 1425 aa32.15■■■□□ 2.74
SMARCB1-201ENST00000263121 A2ML1A8K2U0 1454 aa32.14■■■□□ 2.73
SMARCB1-201ENST00000263121 IQGAP1P46940 1657 aa32.12■■■□□ 2.73
SMARCB1-201ENST00000263121 WASHC2AQ641Q2 1341 aa32.12■■■□□ 2.73
SMARCB1-201ENST00000263121 KDM5AP29375 1690 aaKnown RBP32.1■■■□□ 2.73
SMARCB1-201ENST00000263121 VGFO15240 615 aaPredicted RBP32.1■■■□□ 2.73
SMARCB1-201ENST00000263121 ADAMTSL3P82987 1691 aa32.09■■■□□ 2.73
SMARCB1-201ENST00000263121 C11orf95C9JLR9 678 aaPredicted RBP32.08■■■□□ 2.73
SMARCB1-201ENST00000263121 SETBP1Q9Y6X0 1596 aa32.08■■■□□ 2.73
SMARCB1-201ENST00000263121 CFAP70Q5T0N1 1121 aa32.08■■■□□ 2.73
SMARCB1-201ENST00000263121 CCDC7Q96M83 1385 aa32.07■■■□□ 2.72
SMARCB1-201ENST00000263121 ST20-MTHFSA0A0A6YYL1 179 aa32.07■■■□□ 2.72
SMARCB1-201ENST00000263121 DDX10Q13206 875 aaKnown RBP32.07■■■□□ 2.72
SMARCB1-201ENST00000263121 STAG3Q9UJ98 1225 aa32.07■■■□□ 2.72
SMARCB1-201ENST00000263121 SCAF11Q99590 1463 aaKnown RBP32.06■■■□□ 2.72
SMARCB1-201ENST00000263121 CEBPAP49715 358 aaPredicted RBP32.05■■■□□ 2.72
SMARCB1-201ENST00000263121 NLRP1Q9C000 1473 aa32.04■■■□□ 2.72
SMARCB1-201ENST00000263121 C14orf93Q9H972 538 aaKnown RBP32.04■■■□□ 2.72
SMARCB1-201ENST00000263121 RIMS1Q86UR5 1692 aaKnown RBP32.04■■■□□ 2.72
SMARCB1-201ENST00000263121 UBR1Q8IWV7 1749 aa32.02■■■□□ 2.72
SMARCB1-201ENST00000263121 KIF7Q2M1P5 1343 aa32.01■■■□□ 2.71
SMARCB1-201ENST00000263121 NUTM2DQ5VT03 806 aaPredicted RBP32■■■□□ 2.71
SMARCB1-201ENST00000263121 ADGRB1O14514 1584 aa32■■■□□ 2.71
SMARCB1-201ENST00000263121 RIMS2Q9UQ26 1411 aa31.99■■■□□ 2.71
SMARCB1-201ENST00000263121 MIER1Q8N108 512 aa31.95■■■□□ 2.7
SMARCB1-201ENST00000263121 TESK2Q96S53 571 aa31.94■■■□□ 2.7
SMARCB1-201ENST00000263121 EIF3AQ14152 1382 aaKnown RBP31.92■■■□□ 2.7
SMARCB1-201ENST00000263121 MYO3AQ8NEV4 1616 aa31.91■■■□□ 2.7
SMARCB1-201ENST00000263121 TMEM2Q9UHN6 1383 aa31.88■■■□□ 2.69
SMARCB1-201ENST00000263121 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.88■■■□□ 2.69
SMARCB1-201ENST00000263121 ASXL1Q8IXJ9 1541 aa31.88■■■□□ 2.69
SMARCB1-201ENST00000263121 ALKQ9UM73 1620 aa31.86■■■□□ 2.69
SMARCB1-201ENST00000263121 PLPPR3Q6T4P5 718 aa31.86■■■□□ 2.69
SMARCB1-201ENST00000263121 TMEM132EQ6IEE7 984 aa31.83■■■□□ 2.69
SMARCB1-201ENST00000263121 NRXN3Q9Y4C0 1643 aa31.82■■■□□ 2.68
SMARCB1-201ENST00000263121 DISP3Q9P2K9 1392 aa31.82■■■□□ 2.68
SMARCB1-201ENST00000263121 HDGFP51858 240 aaKnown RBP31.82■■■□□ 2.68
SMARCB1-201ENST00000263121 SETD1AO15047 1707 aaKnown RBP31.82■■■□□ 2.68
SMARCB1-201ENST00000263121 SLIT1O75093 1534 aa31.81■■■□□ 2.68
SMARCB1-201ENST00000263121 ARHGAP23Q9P227 1491 aa31.8■■■□□ 2.68
SMARCB1-201ENST00000263121 CEP170BQ9Y4F5 1589 aaPredicted RBP31.79■■■□□ 2.68
SMARCB1-201ENST00000263121 TMF1P82094 1093 aa31.79■■■□□ 2.68
SMARCB1-201ENST00000263121 PTPRMP28827 1452 aa31.78■■■□□ 2.68
SMARCB1-201ENST00000263121 ARHGEF28Q8N1W1 1705 aaKnown RBP31.78■■■□□ 2.68
SMARCB1-201ENST00000263121 SBNO2Q9Y2G9 1366 aa31.77■■■□□ 2.68
SMARCB1-201ENST00000263121 TRAK1Q9UPV9 953 aa31.76■■■□□ 2.67
SMARCB1-201ENST00000263121 ZNF142P52746 1687 aaPredicted RBP31.75■■■□□ 2.67
SMARCB1-201ENST00000263121 POLR3GLQ9BT43 218 aa31.74■■■□□ 2.67
SMARCB1-201ENST00000263121 CENPJQ9HC77 1338 aaPredicted RBP31.73■■■□□ 2.67
SMARCB1-201ENST00000263121 SENP3Q9H4L4 574 aaPredicted RBP31.73■■■□□ 2.67
SMARCB1-201ENST00000263121 QRICH2Q9H0J4 1663 aa31.72■■■□□ 2.67
SMARCB1-201ENST00000263121 SLC24A1O60721 1099 aa31.72■■■□□ 2.67
SMARCB1-201ENST00000263121 THEMISQ8N1K5 641 aaPredicted RBP31.72■■■□□ 2.67
SMARCB1-201ENST00000263121 YTHDC2Q9H6S0 1430 aaKnown RBP31.72■■■□□ 2.67
SMARCB1-201ENST00000263121 PLEKHG1Q9ULL1 1385 aa31.7■■■□□ 2.67
SMARCB1-201ENST00000263121 LTKP29376 864 aa31.69■■■□□ 2.66
SMARCB1-201ENST00000263121 SETD1BQ9UPS6 1966 aaKnown RBP31.69■■■□□ 2.66
SMARCB1-201ENST00000263121 ANP32CO43423 234 aa31.67■■■□□ 2.66
SMARCB1-201ENST00000263121 TXNDC2Q86VQ3 553 aa31.66■■■□□ 2.66
SMARCB1-201ENST00000263121 CDCA8Q53HL2 280 aa31.65■■■□□ 2.66
SMARCB1-201ENST00000263121 EID1Q9Y6B2 187 aa31.65■■■□□ 2.66
SMARCB1-201ENST00000263121 ADAMTS13Q76LX8 1427 aa31.64■■■□□ 2.66
SMARCB1-201ENST00000263121 DLC1Q96QB1 1528 aa31.64■■■□□ 2.65
SMARCB1-201ENST00000263121 LRPPRCP42704 1394 aaKnown RBP31.64■■■□□ 2.65
SMARCB1-201ENST00000263121 STK26Q9P289 416 aa31.62■■■□□ 2.65
SMARCB1-201ENST00000263121 MED14O60244 1454 aa31.61■■■□□ 2.65
SMARCB1-201ENST00000263121 METP08581 1390 aa31.61■■■□□ 2.65
SMARCB1-201ENST00000263121 ABCC11Q96J66 1382 aa31.59■■■□□ 2.65
SMARCB1-201ENST00000263121 KNDC1Q76NI1 1749 aa31.58■■■□□ 2.65
SMARCB1-201ENST00000263121 MYOM1P52179 1685 aa31.57■■■□□ 2.64
SMARCB1-201ENST00000263121 BCANQ96GW7 911 aa31.55■■■□□ 2.64
SMARCB1-201ENST00000263121 TECPR2O15040 1411 aa31.54■■■□□ 2.64
SMARCB1-201ENST00000263121 DIP2AQ14689 1571 aa31.54■■■□□ 2.64
SMARCB1-201ENST00000263121 TULP4Q9NRJ4 1543 aa31.53■■■□□ 2.64
SMARCB1-201ENST00000263121 PRAM1Q96QH2 718 aa31.52■■■□□ 2.64
SMARCB1-201ENST00000263121 CPS1P31327 1500 aa31.51■■■□□ 2.63
SMARCB1-201ENST00000263121 CCER2I3L3R5 266 aa31.51■■■□□ 2.63
SMARCB1-201ENST00000263121 PRKRIP1Q9H875 184 aaPredicted RBP31.49■■■□□ 2.63
SMARCB1-201ENST00000263121 POGKQ9P215 609 aa31.48■■■□□ 2.63
SMARCB1-201ENST00000263121 TBX22Q9Y458 520 aa31.48■■■□□ 2.63
SMARCB1-201ENST00000263121 SIRT1Q96EB6 747 aa31.47■■■□□ 2.63
SMARCB1-201ENST00000263121 PUS7Q96PZ0 661 aaKnown RBP31.47■■■□□ 2.63
SMARCB1-201ENST00000263121 EVC2Q86UK5 1308 aa31.47■■■□□ 2.63
SMARCB1-201ENST00000263121 FAM135BQ49AJ0 1406 aa31.47■■■□□ 2.63
SMARCB1-201ENST00000263121 PER1O15534 1290 aaPredicted RBP31.46■■■□□ 2.63
SMARCB1-201ENST00000263121 PANK3Q9H999 370 aa31.46■■■□□ 2.63
SMARCB1-201ENST00000263121 SAFB2Q14151 953 aaKnown RBP eCLIP31.45■■■□□ 2.63
SMARCB1-201ENST00000263121 SLC26A8Q96RN1 970 aa31.44■■■□□ 2.62
SMARCB1-201ENST00000263121 ANKLE2Q86XL3 938 aa31.44■■■□□ 2.62
SMARCB1-201ENST00000263121 PLEKHH1Q9ULM0 1364 aa31.43■■■□□ 2.62
SMARCB1-201ENST00000263121 PTPRUQ92729 1446 aa31.42■■■□□ 2.62
SMARCB1-201ENST00000263121 WAPLQ7Z5K2 1190 aa31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms