RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 TTC5Q8N0Z6 440 aa16.63■□□□□ 0.25
SF3A1-201ENST00000215793 TNNT3P45378 269 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-201ENST00000215793 TPD52L1Q16890 204 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-201ENST00000215793 ROCK1Q13464 1354 aa16.63■□□□□ 0.25
SF3A1-201ENST00000215793 GSE1Q14687 1217 aa16.62■□□□□ 0.25
SF3A1-201ENST00000215793 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
SF3A1-201ENST00000215793 TPM1P09493 284 aa16.61■□□□□ 0.25
SF3A1-201ENST00000215793 MYOM3Q5VTT5 1437 aa16.61■□□□□ 0.25
SF3A1-201ENST00000215793 DDX58O95786 925 aaKnown RBP16.6■□□□□ 0.25
SF3A1-201ENST00000215793 RIPK4P57078 832 aa16.6■□□□□ 0.25
SF3A1-201ENST00000215793 AAMPQ13685 434 aa16.6■□□□□ 0.25
SF3A1-201ENST00000215793 PES1O00541 588 aaKnown RBP16.59■□□□□ 0.25
SF3A1-201ENST00000215793 VPS53Q5VIR6 699 aa16.59■□□□□ 0.25
SF3A1-201ENST00000215793 RUNDC1Q96C34 613 aa16.59■□□□□ 0.25
SF3A1-201ENST00000215793 IFIT2P09913 472 aaKnown RBP16.59■□□□□ 0.25
SF3A1-201ENST00000215793 SLC4A3P48751 1232 aa16.59■□□□□ 0.25
SF3A1-201ENST00000215793 EIF2S2P20042 333 aaKnown RBP16.58■□□□□ 0.25
SF3A1-201ENST00000215793 RNF20Q5VTR2 975 aa16.58■□□□□ 0.25
SF3A1-201ENST00000215793 CHMP5Q9NZZ3 219 aa16.58■□□□□ 0.24
SF3A1-201ENST00000215793 TPM2P07951 284 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 EVA1CP58658 441 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 MCTP1Q6DN14 999 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 FANCIQ9NVI1 1328 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 TRIM29Q14134 588 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 GNAI1P63096 354 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 HSP90AB4PQ58FF6 505 aa16.57■□□□□ 0.24
SF3A1-201ENST00000215793 AMOTL1Q8IY63 956 aa16.56■□□□□ 0.24
SF3A1-201ENST00000215793 AMER1Q5JTC6 1135 aaPredicted RBP16.56■□□□□ 0.24
SF3A1-201ENST00000215793 CPLX1O14810 134 aa16.56■□□□□ 0.24
SF3A1-201ENST00000215793 FKBP5Q13451 457 aaPredicted RBP16.56■□□□□ 0.24
SF3A1-201ENST00000215793 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
SF3A1-201ENST00000215793 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.55■□□□□ 0.24
SF3A1-201ENST00000215793 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
SF3A1-201ENST00000215793 FOXD4L6Q3SYB3 417 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-201ENST00000215793 FOXD4L3Q6VB84 417 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-201ENST00000215793 NOL10Q9BSC4 688 aaKnown RBP16.55■□□□□ 0.24
SF3A1-201ENST00000215793 G3BP1Q13283 466 aaKnown RBP eCLIP16.55■□□□□ 0.241e-6■■■□□ 15.4
SF3A1-201ENST00000215793 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-201ENST00000215793 TRDNQ13061 729 aa16.54■□□□□ 0.24
SF3A1-201ENST00000215793 INTS3Q68E01 1043 aaKnown RBP16.54■□□□□ 0.24
SF3A1-201ENST00000215793 ANO2Q9NQ90 1003 aa16.54■□□□□ 0.24
SF3A1-201ENST00000215793 NUCB2P80303 420 aa16.53■□□□□ 0.24
SF3A1-201ENST00000215793 IPO7O95373 1038 aaKnown RBP16.53■□□□□ 0.24
SF3A1-201ENST00000215793 CCDC47Q96A33 483 aaKnown RBP16.53■□□□□ 0.24
SF3A1-201ENST00000215793 CCDC7Q96M83 1385 aa16.52■□□□□ 0.24
SF3A1-201ENST00000215793 HSP90AA2PQ14568 343 aaPredicted RBP16.52■□□□□ 0.24
SF3A1-201ENST00000215793 PDE4CQ08493 712 aa16.52■□□□□ 0.24
SF3A1-201ENST00000215793 CCDC70Q6NSX1 233 aa16.52■□□□□ 0.24
SF3A1-201ENST00000215793 ANKRD20A12PQ8NF67 263 aa16.52■□□□□ 0.24
SF3A1-201ENST00000215793 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
SF3A1-201ENST00000215793 GPS2Q13227 327 aa16.51■□□□□ 0.23
SF3A1-201ENST00000215793 HOOK1Q9UJC3 728 aaKnown RBP16.51■□□□□ 0.23
SF3A1-201ENST00000215793 ERC2O15083 957 aa16.51■□□□□ 0.23
SF3A1-201ENST00000215793 PSME1Q06323 249 aa16.51■□□□□ 0.23
SF3A1-201ENST00000215793 APPP05067 770 aa16.51■□□□□ 0.23
SF3A1-201ENST00000215793 MIA2Q96PC5 1412 aa16.51■□□□□ 0.23
SF3A1-201ENST00000215793 KIF7Q2M1P5 1343 aa16.5■□□□□ 0.23
SF3A1-201ENST00000215793 FGD6Q6ZV73 1430 aa16.5■□□□□ 0.23
SF3A1-201ENST00000215793 CCAR2Q8N163 923 aaKnown RBP16.5■□□□□ 0.23
SF3A1-201ENST00000215793 BICD2Q8TD16 824 aa16.49■□□□□ 0.23
SF3A1-201ENST00000215793 TSPYL4Q9UJ04 414 aa16.49■□□□□ 0.23
SF3A1-201ENST00000215793 SMC3Q9UQE7 1217 aa16.48■□□□□ 0.23
SF3A1-201ENST00000215793 NECTIN2Q92692 538 aa16.48■□□□□ 0.23
SF3A1-201ENST00000215793 PRM3Q9NNZ6 103 aa16.48■□□□□ 0.23
SF3A1-201ENST00000215793 IGF1RP08069 1367 aa16.48■□□□□ 0.23
SF3A1-201ENST00000215793 LNPKQ9C0E8 428 aa16.47■□□□□ 0.23
SF3A1-201ENST00000215793 VPS37DQ86XT2 251 aa16.47■□□□□ 0.23
SF3A1-201ENST00000215793 RAPGEF4Q8WZA2 1011 aa16.46■□□□□ 0.23
SF3A1-201ENST00000215793 C22orf23Q9BZE7 217 aa16.46■□□□□ 0.23
SF3A1-201ENST00000215793 VPS37CA5D8V6 355 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-201ENST00000215793 TRIM34Q9BYJ4 488 aa16.46■□□□□ 0.23
SF3A1-201ENST00000215793 CUX1P39880 1505 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 CYB5RLQ6IPT4 315 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 CNTLNQ9NXG0 1405 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 ERICH2A1L162 156 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 GAPVD1Q14C86 1478 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 BRD4O60885 1362 aaPredicted RBP16.45■□□□□ 0.22
SF3A1-201ENST00000215793 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
SF3A1-201ENST00000215793 ANKRD50Q9ULJ7 1429 aa16.44■□□□□ 0.22
SF3A1-201ENST00000215793 TCEAL9Q9UHQ7 104 aa16.44■□□□□ 0.22
SF3A1-201ENST00000215793 SAFBQ15424 915 aaKnown RBP eCLIP16.44■□□□□ 0.22
SF3A1-201ENST00000215793 CCDC73Q6ZRK6 1079 aa16.44■□□□□ 0.22
SF3A1-201ENST00000215793 NFXL1Q6ZNB6 911 aa16.43■□□□□ 0.22
SF3A1-201ENST00000215793 SASS6Q6UVJ0 657 aa16.43■□□□□ 0.22
SF3A1-201ENST00000215793 PCMTD1Q96MG8 357 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-201ENST00000215793 CDC45O75419 566 aa16.43■□□□□ 0.22
SF3A1-201ENST00000215793 GGNBP2Q9H3C7 697 aa16.43■□□□□ 0.22
SF3A1-201ENST00000215793 HMOX1P09601 288 aa16.42■□□□□ 0.22
SF3A1-201ENST00000215793 ZNF592Q92610 1267 aa16.42■□□□□ 0.22
SF3A1-201ENST00000215793 DHX16O60231 1041 aaKnown RBP16.42■□□□□ 0.22
SF3A1-201ENST00000215793 RALYLQ86SE5 291 aaKnown RBP16.42■□□□□ 0.22
SF3A1-201ENST00000215793 UBTFL1P0CB47 393 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-201ENST00000215793 HOMER1Q86YM7 354 aa16.41■□□□□ 0.22
SF3A1-201ENST00000215793 CTDP1Q9Y5B0 961 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-201ENST00000215793 ZNF644Q9H582 1327 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-201ENST00000215793 RIC3Q7Z5B4 369 aa16.41■□□□□ 0.22
SF3A1-201ENST00000215793 SYTL4Q96C24 671 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-201ENST00000215793 MSH5O43196 834 aa16.4■□□□□ 0.22
SF3A1-201ENST00000215793 GNAI3P08754 354 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms