RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 FAM184AQ8NB25 1140 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 POLR3GO15318 223 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 FAM107BQ9H098 131 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 RRBP1Q9P2E9 1410 aaKnown RBP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 MCM3P25205 808 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 DEF6Q9H4E7 631 aa7.36□□□□□ -1.23
VPS13D-201ENST00000011700 SAFBQ15424 915 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS13D-201ENST00000011700 KIF2AO00139 706 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-201ENST00000011700 CUX2O14529 1486 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 TAF7LQ5H9L4 462 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 GOLGA6L10A6NI86 522 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 DCAF11Q8TEB1 546 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 CHMP5Q9NZZ3 219 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 CT47B1P0C2W7 299 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-201ENST00000011700 TRDNQ13061 729 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 ITSN2Q9NZM3 1697 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 DESP17661 470 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-201ENST00000011700 EID1Q9Y6B2 187 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 ERC2O15083 957 aa7.35□□□□□ -1.23
VPS13D-201ENST00000011700 TRIM6-TRIM34B2RNG4 842 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 ODF2Q5BJF6 829 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 JMYQ8N9B5 988 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 CUL7Q14999 1698 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 MNS1Q8NEH6 495 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 SMARCE1Q969G3 411 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 PSMA5P28066 241 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 CCDC39Q9UFE4 941 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 HECW1Q76N89 1606 aa7.34□□□□□ -1.23
VPS13D-201ENST00000011700 EIF3JO75822 258 aaKnown RBP7.34□□□□□ -1.23
VPS13D-201ENST00000011700 RAPGEF2Q9Y4G8 1499 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 DDX58O95786 925 aaKnown RBP7.33□□□□□ -1.24
VPS13D-201ENST00000011700 NF2P35240 595 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 EZRP15311 586 aaKnown RBP7.33□□□□□ -1.24
VPS13D-201ENST00000011700 ERICH2A1L162 156 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 ARID3CA6NKF2 412 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 PRM3Q9NNZ6 103 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 MYH10P35580 1976 aa7.33□□□□□ -1.24
VPS13D-201ENST00000011700 MARCH6O60337 910 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 TUBB4BP68371 445 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 LEKR1Q6ZMV7 388 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 WIZO95785 1651 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 DAPK1P53355 1430 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 EFCAB2Q5VUJ9 269 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 ZNF771Q7L3S4 317 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-201ENST00000011700 EVC2Q86UK5 1308 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 FAM43AQ8N2R8 423 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 TXLNAP40222 546 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 INTS3Q68E01 1043 aaKnown RBP7.32□□□□□ -1.24
VPS13D-201ENST00000011700 OLFM4Q6UX06 510 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 DDX49Q9Y6V7 483 aaKnown RBP7.32□□□□□ -1.24
VPS13D-201ENST00000011700 POLA1P09884 1462 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-201ENST00000011700 EPS15P42566 896 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 RGL3Q3MIN7 710 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 ZNF428Q96B54 188 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 DACH1Q9UI36 760 aa7.32□□□□□ -1.24
VPS13D-201ENST00000011700 SASS6Q6UVJ0 657 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 GON4LQ3T8J9 2241 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 GOLGA6L10A0A0M3HER8 536 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 ERLIN1O75477 346 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 ANKRD1Q15327 319 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 SART3Q15020 963 aaKnown RBP7.31□□□□□ -1.24
VPS13D-201ENST00000011700 G3V3G9 751 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 TPRNQ4KMQ1 711 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 DCAF8Q5TAQ9 597 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 CAVIN2O95810 425 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 U2AF1L5P0DN76 240 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-201ENST00000011700 U2AF1Q01081 240 aaKnown RBP eCLIP7.31□□□□□ -1.244e-7■■■□□ 17.5
VPS13D-201ENST00000011700 CCDC43Q96MW1 224 aaKnown RBP7.31□□□□□ -1.24
VPS13D-201ENST00000011700 MRE11P49959 708 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 NUP155O75694 1391 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 H0YHG0 523 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 CPLX1O14810 134 aa7.31□□□□□ -1.24
VPS13D-201ENST00000011700 CT47A1Q5JQC4 288 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-201ENST00000011700 CCDC73Q6ZRK6 1079 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 HOMER1Q86YM7 354 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 KIF3BO15066 747 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 ZKSCAN2Q63HK3 967 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 CCDC88BA6NC98 1476 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 DDX12PQ92771 950 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 TRIM34Q9BYJ4 488 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 R3HCC1Q9Y3T6 440 aaKnown RBP7.3□□□□□ -1.24
VPS13D-201ENST00000011700 CFAP65Q6ZU64 1925 aaKnown RBP7.3□□□□□ -1.24
VPS13D-201ENST00000011700 GOLGA4Q13439 2230 aaKnown RBP7.3□□□□□ -1.24
VPS13D-201ENST00000011700 SLC3A2P08195 630 aaKnown RBP7.3□□□□□ -1.24
VPS13D-201ENST00000011700 NEUROD2Q15784 382 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 PODXL2Q9NZ53 605 aa7.3□□□□□ -1.24
VPS13D-201ENST00000011700 MYOM3Q5VTT5 1437 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 FYCO1Q9BQS8 1478 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 B4GALNT3Q6L9W6 998 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 WWC2Q6AWC2 1192 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 API5Q9BZZ5 524 aaKnown RBP7.29□□□□□ -1.24
VPS13D-201ENST00000011700 STIM1Q13586 685 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 CC2D1BQ5T0F9 858 aaKnown RBP7.29□□□□□ -1.24
VPS13D-201ENST00000011700 CWC22Q9HCG8 908 aaKnown RBP7.29□□□□□ -1.24
VPS13D-201ENST00000011700 RAB3GAP2Q9H2M9 1393 aa7.29□□□□□ -1.24
VPS13D-201ENST00000011700 IRX6P78412 446 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-201ENST00000011700 VGFO15240 615 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-201ENST00000011700 KIAA0754O94854 1291 aa7.28□□□□□ -1.24
VPS13D-201ENST00000011700 ZNHIT6Q9NWK9 470 aaKnown RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms