RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Atp10dQ8K2X1 1416 aa21.21■□□□□ 0.99
Trim28-201ENSMUST00000005705 Rock1P70335 1354 aa21.21■□□□□ 0.99
Trim28-201ENSMUST00000005705 Znf608Q56A10 1511 aa21.2■□□□□ 0.98
Trim28-201ENSMUST00000005705 Abcc1O35379 1528 aa21.2■□□□□ 0.98
Trim28-201ENSMUST00000005705 Prkrip1Q9CWV6 186 aaKnown RBP21.2■□□□□ 0.98
Trim28-201ENSMUST00000005705 Kank1E9Q238 1360 aa21.19■□□□□ 0.98
Trim28-201ENSMUST00000005705 Trim30dE9PWL0 497 aa21.19■□□□□ 0.98
Trim28-201ENSMUST00000005705 Gas2l2Q5SSG4 860 aa21.18■□□□□ 0.98
Trim28-201ENSMUST00000005705 AI481877A2ALV5 1481 aa21.16■□□□□ 0.98
Trim28-201ENSMUST00000005705 Rnf17Q99MV7 1640 aa21.16■□□□□ 0.98
Trim28-201ENSMUST00000005705 Tmf1B9EKI3 1091 aa21.15■□□□□ 0.98
Trim28-201ENSMUST00000005705 Iqgap1Q9JKF1 1657 aaKnown RBP21.15■□□□□ 0.98
Trim28-201ENSMUST00000005705 Chmp5Q9D7S9 219 aa21.14■□□□□ 0.97
Trim28-201ENSMUST00000005705 Arid4bA2CG63 1314 aaKnown RBP21.14■□□□□ 0.97
Trim28-201ENSMUST00000005705 Prdm16A2A935 1275 aa21.14■□□□□ 0.97
Trim28-201ENSMUST00000005705 Tspyl2Q7TQI8 677 aa21.14■□□□□ 0.97
Trim28-201ENSMUST00000005705 Spryd3E9Q9B3 442 aa21.13■□□□□ 0.97
Trim28-201ENSMUST00000005705 Ppp2r1aQ76MZ3 589 aa21.13■□□□□ 0.97
Trim28-201ENSMUST00000005705 Cdc42bpbQ7TT50 1713 aa21.12■□□□□ 0.97
Trim28-201ENSMUST00000005705 Zranb1Q7M760 708 aa21.12■□□□□ 0.97
Trim28-201ENSMUST00000005705 Ccdc9Q8VC31 543 aaKnown RBP21.11■□□□□ 0.97
Trim28-201ENSMUST00000005705 Kif16bB1AVY7 1312 aa21.1■□□□□ 0.97
Trim28-201ENSMUST00000005705 Cfap74Q3UY96 1578 aa21.09■□□□□ 0.97
Trim28-201ENSMUST00000005705 Pank1Q8K4K6 548 aa21.09■□□□□ 0.97
Trim28-201ENSMUST00000005705 Srpk2O54781 681 aaKnown RBP21.09■□□□□ 0.97
Trim28-201ENSMUST00000005705 Stk26Q99JT2 416 aa21.09■□□□□ 0.97
Trim28-201ENSMUST00000005705 Kif7B7ZNG0 1348 aa21.09■□□□□ 0.97
Trim28-201ENSMUST00000005705 NhsB1AV60 1647 aa21.08■□□□□ 0.97
Trim28-201ENSMUST00000005705 Chd1P40201 1711 aa21.08■□□□□ 0.97
Trim28-201ENSMUST00000005705 Rwdd1Q9CQK7 243 aa21.08■□□□□ 0.96
Trim28-201ENSMUST00000005705 Atxn3Q9CVD2 355 aa21.07■□□□□ 0.96
Trim28-201ENSMUST00000005705 Mast1Q9R1L5 1570 aa21.07■□□□□ 0.96
Trim28-201ENSMUST00000005705 Edc4Q3UJB9 1406 aaKnown RBP21.07■□□□□ 0.96
Trim28-201ENSMUST00000005705 Fam184bQ0KK56 942 aa21.07■□□□□ 0.96
Trim28-201ENSMUST00000005705 Dnai1Q8C0M8 701 aa21.06■□□□□ 0.96
Trim28-201ENSMUST00000005705 Usp40Q8BWR4 1235 aa21.05■□□□□ 0.96
Trim28-201ENSMUST00000005705 Kdm5cP41230 1554 aa21.04■□□□□ 0.96
Trim28-201ENSMUST00000005705 Nkx1-2P42580 305 aa21.04■□□□□ 0.96
Trim28-201ENSMUST00000005705 Cluap1Q8R3P7 413 aa21.04■□□□□ 0.96
Trim28-201ENSMUST00000005705 Znf330Q922H9 316 aa21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 Abcc3B2RX12 1523 aa21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 EspnQ9ET47 871 aa21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 Pdcd11Q6NS46 1862 aaKnown RBP21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 Usp54Q8BL06 1588 aaKnown RBP21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 Adamts13Q769J6 1426 aa21.03■□□□□ 0.96
Trim28-201ENSMUST00000005705 Eif2s2Q99L45 331 aaKnown RBP21.02■□□□□ 0.96
Trim28-201ENSMUST00000005705 Gtf2e1Q9D0D5 440 aa21.02■□□□□ 0.96
Trim28-201ENSMUST00000005705 Lemd3Q9WU40 921 aa21.02■□□□□ 0.96
Trim28-201ENSMUST00000005705 Ythdc2B2RR83 1445 aaKnown RBP21.02■□□□□ 0.96
Trim28-201ENSMUST00000005705 Ak9G3UYQ4 1894 aa21.01■□□□□ 0.95
Trim28-201ENSMUST00000005705 Nsd2Q8BVE8 1365 aa21.01■□□□□ 0.95
Trim28-201ENSMUST00000005705 NudcO35685 332 aaKnown RBP21.01■□□□□ 0.95
Trim28-201ENSMUST00000005705 Ccdc30Q8BVF4 654 aa21■□□□□ 0.95
Trim28-201ENSMUST00000005705 Apaf1O88879 1249 aa21■□□□□ 0.95
Trim28-201ENSMUST00000005705 Abca8bQ8K440 1620 aa20.99■□□□□ 0.95
Trim28-201ENSMUST00000005705 Golga2Q921M4 999 aa20.98■□□□□ 0.95
Trim28-201ENSMUST00000005705 Stag3O70576 1240 aa20.98■□□□□ 0.95
Trim28-201ENSMUST00000005705 Hsp90ab1P11499 724 aaKnown RBP20.98■□□□□ 0.95
Trim28-201ENSMUST00000005705 Plppr3Q7TPB0 716 aa20.98■□□□□ 0.95
Trim28-201ENSMUST00000005705 Plin1Q8CGN5 517 aa20.98■□□□□ 0.95
Trim28-201ENSMUST00000005705 Kif1bQ60575 1816 aaKnown RBP20.97■□□□□ 0.95
Trim28-201ENSMUST00000005705 Tulp4Q9JIL5 1547 aa20.97■□□□□ 0.95
Trim28-201ENSMUST00000005705 Cep170Q6A065 1588 aa20.96■□□□□ 0.95
Trim28-201ENSMUST00000005705 Kidins220E9Q9B7 1793 aa20.96■□□□□ 0.95
Trim28-201ENSMUST00000005705 Ppip5k1A2ARP1 1436 aa20.96■□□□□ 0.95
Trim28-201ENSMUST00000005705 Hecw1Q8K4P8 1604 aa20.95■□□□□ 0.94
Trim28-201ENSMUST00000005705 ShprhQ7TPQ3 1674 aa20.95■□□□□ 0.94
Trim28-201ENSMUST00000005705 Igf1rQ60751 1373 aa20.93■□□□□ 0.94
Trim28-201ENSMUST00000005705 Gm6268A2A3U9 297 aa20.93■□□□□ 0.94
Trim28-201ENSMUST00000005705 Taok2Q6ZQ29 1240 aa20.93■□□□□ 0.94
Trim28-201ENSMUST00000005705 Ipo4Q8VI75 1082 aa20.93■□□□□ 0.94
Trim28-201ENSMUST00000005705 Abcc6Q9R1S7 1498 aa20.92■□□□□ 0.94
Trim28-201ENSMUST00000005705 Ttc21bQ0HA38 1315 aa20.92■□□□□ 0.94
Trim28-201ENSMUST00000005705 Neurl4Q5NCX5 1563 aa20.92■□□□□ 0.94
Trim28-201ENSMUST00000005705 Gapvd1Q6PAR5 1458 aa20.91■□□□□ 0.94
Trim28-201ENSMUST00000005705 Robo2Q7TPD3 1470 aa20.91■□□□□ 0.94
Trim28-201ENSMUST00000005705 Ak7Q9D2H2 614 aa20.91■□□□□ 0.94
Trim28-201ENSMUST00000005705 Rtn4Q99P72 1162 aaKnown RBP20.9■□□□□ 0.94
Trim28-201ENSMUST00000005705 ErbinQ80TH2 1402 aa20.9■□□□□ 0.94
Trim28-201ENSMUST00000005705 Ppm1gQ61074 542 aa20.89■□□□□ 0.94
Trim28-201ENSMUST00000005705 Setd1aE9PYH6 1716 aa20.89■□□□□ 0.94
Trim28-201ENSMUST00000005705 Kiaa1210E9Q0C6 1637 aa20.89■□□□□ 0.93
Trim28-201ENSMUST00000005705 Zmym4A2A791 1549 aaKnown RBP20.89■□□□□ 0.93
Trim28-201ENSMUST00000005705 U2af1Q9D883 239 aaKnown RBP20.89■□□□□ 0.93
Trim28-201ENSMUST00000005705 PtprtQ99M80 1454 aa20.88■□□□□ 0.93
Trim28-201ENSMUST00000005705 Znf316Q6PGE4 1016 aa20.88■□□□□ 0.93
Trim28-201ENSMUST00000005705 Ksr2Q3UVC0 959 aa20.88■□□□□ 0.93
Trim28-201ENSMUST00000005705 Nutm1Q8BHP2 1126 aa20.88■□□□□ 0.93
Trim28-201ENSMUST00000005705 Ylpm1Q9R0I7 1386 aaKnown RBP20.88■□□□□ 0.93
Trim28-201ENSMUST00000005705 Xrn1P97789 1719 aaKnown RBP20.87■□□□□ 0.93
Trim28-201ENSMUST00000005705 Ppp1r3fQ9JIG4 799 aa20.87■□□□□ 0.93
Trim28-201ENSMUST00000005705 Tubgcp6G5E8P0 1769 aa20.86■□□□□ 0.93
Trim28-201ENSMUST00000005705 Mbd3Q9Z2D8 285 aaKnown RBP20.86■□□□□ 0.93
Trim28-201ENSMUST00000005705 Kdm2bQ6P1G2 1309 aa20.86■□□□□ 0.93
Trim28-201ENSMUST00000005705 KarsQ99MN1 595 aaKnown RBP20.86■□□□□ 0.93
Trim28-201ENSMUST00000005705 Mink1Q9JM52 1308 aa20.86■□□□□ 0.93
Trim28-201ENSMUST00000005705 Znf692Q3U381 531 aa20.85■□□□□ 0.93
Trim28-201ENSMUST00000005705 Mre11Q61216 706 aa20.85■□□□□ 0.93
Trim28-201ENSMUST00000005705 Vsig10D3YX43 558 aa20.84■□□□□ 0.93
Trim28-201ENSMUST00000005705 Pnmal2G3X9N3 661 aa20.84■□□□□ 0.93
Retrieved 100 of 22,080 RNA–protein pairs in 28.4 ms