RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YLR050C	Q12155	161 aa	Known RBP	4.57	□□□□□ -1.68
NUP1	YOR098C	SFM1	Q12314	213 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	EAF3	Q12432	401 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	PEX34	P25584	144 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	TIP20	P33891	701 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	GPX1	P36014	167 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	BDH1	P39714	382 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	YER186C	P40101	306 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	PAN6	P40459	309 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	GAS2	Q06135	555 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	TRM10	Q12400	293 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	FUN26	P31381	517 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	UPS2	P35200	230 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	CHL4	P38907	458 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	MNN5	P46982	586 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	MOG1	P47123	218 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	MIM1	Q08176	113 aa		4.57	□□□□□ -1.68
NUP1	YOR098C	MRP21	P38175	177 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	YOL019W	Q08157	551 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	RDI1	Q12434	202 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	MRS1	P07266	363 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	MIR1	P23641	311 aa	Known RBP	4.56	□□□□□ -1.68
NUP1	YOR098C	MOB2	P43563	287 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	BXI1	P48558	297 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	NRM1	P53718	249 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	TIM44	Q01852	431 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	YPR091C	Q06833	770 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	YOR214C	Q12282	236 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	MHF1	Q3E835	90 aa		4.56	□□□□□ -1.68
NUP1	YOR098C	BUB2	P26448	306 aa	Predicted RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	MIX23	P38162	196 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	SSH1	P38353	490 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	GAS3	Q03655	524 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	FEX1	Q08913	375 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	IGO2	Q9P305	131 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	VPS13	Q07878	3144 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	RPL4A	P10664	362 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	MRPL17	P36528	281 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	APS3	P47064	194 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	RPL4B	P49626	362 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	SDC1	Q03323	175 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YMR010W	Q03687	405 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	NEJ1	Q06148	342 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YLR036C	Q07986	203 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	FEX2	Q08991	375 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	PST2	Q12335	198 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	YKL018C-A	Q3E7A7	99 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	STE7	P06784	515 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YGL041W-A	P0C5N3	154 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	TRX3	P25372	127 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	HYM1	P32464	399 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	OXA1	P39952	402 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YMR144W	P40214	342 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	BUD13	P46947	266 aa	Predicted RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	YJR111C	P47148	283 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	RMI1	Q02685	241 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YDR249C	Q03787	373 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YHC1	Q05900	231 aa	Known RBP	4.55	□□□□□ -1.68
NUP1	YOR098C	RFU1	Q08003	200 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YOL024W	Q08172	172 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	YGL194C-A	Q2V2P6	80 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	SAS5	Q99314	248 aa		4.55	□□□□□ -1.68
NUP1	YOR098C	MBA1	P38300	278 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	FLO5	P38894	1075 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	PSA1	P41940	361 aa	Known RBP	4.54	□□□□□ -1.68
NUP1	YOR098C	SUN4	P53616	420 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	SLM2	P53955	656 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	PET191	Q02772	108 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	HPT1	Q04178	221 aa	Known RBP	4.54	□□□□□ -1.68
NUP1	YOR098C	RPS18A	P0CX55	146 aa	Known RBP	4.54	□□□□□ -1.68
NUP1	YOR098C	RPS18B	P0CX56	146 aa	Predicted RBP	4.54	□□□□□ -1.68
NUP1	YOR098C	CNB1	P25296	175 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	IRC24	P40580	263 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	CIN5	P40917	295 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	IES4	Q08561	116 aa		4.54	□□□□□ -1.68
NUP1	YOR098C	CYC3	P06182	269 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	MDM10	P18409	493 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	YCR023C	P25351	611 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	PHO88	P38264	188 aa	Predicted RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	CRZ1	P53968	678 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	YDR415C	Q04033	374 aa	Predicted RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	RRP40	Q08285	240 aa	Known RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	YHR213W-A	Q8TGT4	77 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	PHO2	P07269	559 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	COS2	P0CX12	379 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	COS3	P0CX13	379 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	ERV2	Q12284	196 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	SEC22	P22214	214 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	RNQ1	P25367	405 aa		4.53	□□□□□ -1.68
NUP1	YOR098C	YCR090C	P25654	182 aa	Known RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	SHE3	P38272	425 aa	Known RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	IDP3	P53982	420 aa	Known RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	SYC1	Q08553	188 aa	Predicted RBP	4.53	□□□□□ -1.68
NUP1	YOR098C	RNA14	P25298	677 aa	Known RBP	4.52	□□□□□ -1.69
NUP1	YOR098C	YCR025C	P25352	136 aa		4.52	□□□□□ -1.69
NUP1	YOR098C	YGR026W	P53217	278 aa		4.52	□□□□□ -1.69
NUP1	YOR098C	MPA43	P53583	542 aa	Predicted RBP	4.52	□□□□□ -1.69
NUP1	YOR098C	RIB3	Q99258	208 aa		4.52	□□□□□ -1.69
NUP1	YOR098C	SLH1	P53327	1967 aa	Known RBP	4.52	□□□□□ -1.69
NUP1	YOR098C	FMP23	P38231	175 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 56.7 ms