RNA–Protein interactions for RNA: YLR412W

BER1, Transcript of Protein involved in microtubule-related processes, yeast

Gene BER1, Length 825 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BER1	YLR412W	TVP38	P36164	337 aa		0.83	□□□□□ -2.28
BER1	YLR412W	EAF6	P47128	113 aa		0.83	□□□□□ -2.28
BER1	YLR412W	NUP84	P52891	726 aa		0.83	□□□□□ -2.28
BER1	YLR412W	SWP1	Q02795	286 aa		0.83	□□□□□ -2.28
BER1	YLR412W	YDL180W	Q12301	547 aa		0.83	□□□□□ -2.28
BER1	YLR412W	YNL146C-A	Q3E7Z1	64 aa		0.83	□□□□□ -2.28
BER1	YLR412W	TDA8	Q6B2U8	126 aa		0.83	□□□□□ -2.28
BER1	YLR412W	TIM9	O74700	87 aa		0.82	□□□□□ -2.28
BER1	YLR412W	SNC2	P33328	115 aa		0.82	□□□□□ -2.28
BER1	YLR412W	SRY1	P36007	326 aa		0.82	□□□□□ -2.28
BER1	YLR412W	YEL067C	P39978	195 aa		0.82	□□□□□ -2.28
BER1	YLR412W	KNH1	P50112	268 aa		0.82	□□□□□ -2.28
BER1	YLR412W	SRL4	Q03085	281 aa		0.82	□□□□□ -2.28
BER1	YLR412W	MED4	Q12343	284 aa		0.82	□□□□□ -2.28
BER1	YLR412W	TSC3	Q3E790	80 aa		0.82	□□□□□ -2.28
BER1	YLR412W	SPT3	P06844	337 aa		0.81	□□□□□ -2.28
BER1	YLR412W	AQY2	P0CD90	149 aa		0.81	□□□□□ -2.28
BER1	YLR412W	YBR209W	P38311	105 aa		0.81	□□□□□ -2.28
BER1	YLR412W	CUS2	P53830	285 aa	Predicted RBP	0.81	□□□□□ -2.28
BER1	YLR412W	FSF1	Q12029	327 aa	Known RBP	0.81	□□□□□ -2.28
BER1	YLR412W	NSP1	P14907	823 aa	Known RBP	0.8	□□□□□ -2.28
BER1	YLR412W	URA6	P15700	204 aa		0.8	□□□□□ -2.28
BER1	YLR412W	FMC1	P40491	155 aa		0.8	□□□□□ -2.28
BER1	YLR412W	GVP36	P40531	326 aa	Known RBP	0.8	□□□□□ -2.28
BER1	YLR412W	CDC28	P00546	298 aa	Known RBP	0.79	□□□□□ -2.28
BER1	YLR412W	MATALPHA1	P0CY06	175 aa		0.79	□□□□□ -2.28
BER1	YLR412W	HMLALPHA1	P0CY07	175 aa		0.79	□□□□□ -2.28
BER1	YLR412W	SKG1	P36169	355 aa		0.79	□□□□□ -2.28
BER1	YLR412W	LIA1	P47120	325 aa	Known RBP	0.79	□□□□□ -2.28
BER1	YLR412W	RPL37B	P51402	88 aa	Known RBP	0.79	□□□□□ -2.28
BER1	YLR412W	PRM8	P53174	237 aa		0.79	□□□□□ -2.28
BER1	YLR412W	GPM2	Q12008	311 aa		0.79	□□□□□ -2.28
BER1	YLR412W	MCP1	Q12106	302 aa		0.79	□□□□□ -2.28
BER1	YLR412W	ATG40	Q99325	256 aa		0.79	□□□□□ -2.28
BER1	YLR412W	SIR2	P06700	562 aa		0.78	□□□□□ -2.28
BER1	YLR412W	YER188C-A	P0C0V2	99 aa		0.78	□□□□□ -2.28
BER1	YLR412W	YCR016W	P25617	290 aa	Known RBP	0.78	□□□□□ -2.28
BER1	YLR412W	SEC17	P32602	292 aa		0.78	□□□□□ -2.28
BER1	YLR412W	KDX1	P36005	433 aa		0.78	□□□□□ -2.28
BER1	YLR412W	RPC17	P47076	161 aa		0.78	□□□□□ -2.28
BER1	YLR412W	FYV6	P53913	173 aa		0.78	□□□□□ -2.28
BER1	YLR412W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.78	□□□□□ -2.28	not detected
BER1	YLR412W	PET117	Q02771	107 aa		0.78	□□□□□ -2.28
BER1	YLR412W	YLR236C	A0A023PZG4	107 aa		0.77	□□□□□ -2.29
BER1	YLR412W	DBF2	P22204	572 aa		0.77	□□□□□ -2.29
BER1	YLR412W	PBN1	P25580	416 aa		0.77	□□□□□ -2.29
BER1	YLR412W	UTP30	P36144	274 aa	Known RBP	0.77	□□□□□ -2.29
BER1	YLR412W	PRE6	P40303	254 aa	Known RBP	0.77	□□□□□ -2.29
BER1	YLR412W	HUA1	P40325	198 aa		0.77	□□□□□ -2.29
BER1	YLR412W	YLR283W	Q05867	314 aa		0.77	□□□□□ -2.29
BER1	YLR412W	CFT1	Q06632	1357 aa	Known RBP	0.77	□□□□□ -2.29
BER1	YLR412W	FAR7	P43592	221 aa		0.76	□□□□□ -2.29
BER1	YLR412W	BXI1	P48558	297 aa		0.76	□□□□□ -2.29
BER1	YLR412W	ALG13	P53178	202 aa		0.76	□□□□□ -2.29
BER1	YLR412W	YMR007W	Q03675	126 aa		0.76	□□□□□ -2.29
BER1	YLR412W	CDC123	Q05791	360 aa		0.76	□□□□□ -2.29
BER1	YLR412W	INO80	P53115	1489 aa		0.75	□□□□□ -2.29
BER1	YLR412W	TCA17	P32613	152 aa		0.75	□□□□□ -2.29
BER1	YLR412W	MSN4	P33749	630 aa		0.75	□□□□□ -2.29
BER1	YLR412W	OPY1	P38271	328 aa		0.75	□□□□□ -2.29
BER1	YLR412W	YBR285W	P38354	144 aa		0.75	□□□□□ -2.29
BER1	YLR412W	SIP3	P38717	1229 aa		0.75	□□□□□ -2.29
BER1	YLR412W	VMA22	P38784	181 aa		0.75	□□□□□ -2.29
BER1	YLR412W	SOK1	P40317	901 aa		0.75	□□□□□ -2.29
BER1	YLR412W	BRR6	P53062	197 aa		0.75	□□□□□ -2.29
BER1	YLR412W	RAD28	Q12021	506 aa		0.75	□□□□□ -2.29
BER1	YLR412W	SEC11	P15367	167 aa		0.74	□□□□□ -2.29
BER1	YLR412W	SSO1	P32867	290 aa		0.74	□□□□□ -2.29
BER1	YLR412W	APS1	P35181	156 aa		0.74	□□□□□ -2.29
BER1	YLR412W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.74	□□□□□ -2.29	not detected
BER1	YLR412W	COX15	P40086	486 aa		0.74	□□□□□ -2.29
BER1	YLR412W	MIC26	P50087	233 aa		0.74	□□□□□ -2.29
BER1	YLR412W	ARO8	P53090	500 aa	Known RBP	0.74	□□□□□ -2.29
BER1	YLR412W	YDR274C	P87283	123 aa		0.74	□□□□□ -2.29
BER1	YLR412W	RCE1	Q03530	315 aa		0.74	□□□□□ -2.29
BER1	YLR412W	CUE4	Q04201	117 aa	Predicted RBP	0.74	□□□□□ -2.29
BER1	YLR412W	ACC1	Q00955	2233 aa	Known RBP	0.73	□□□□□ -2.29
BER1	YLR412W	YHR212W-A	P0CX91	67 aa		0.73	□□□□□ -2.29
BER1	YLR412W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.73	□□□□□ -2.29	not detected
BER1	YLR412W	FLX1	P40464	311 aa		0.73	□□□□□ -2.29
BER1	YLR412W	YAE1	P47118	141 aa	Predicted RBP	0.73	□□□□□ -2.29
BER1	YLR412W	RRN5	Q02983	363 aa		0.73	□□□□□ -2.29
BER1	YLR412W	BET1	P22804	142 aa		0.72	□□□□□ -2.29
BER1	YLR412W	EDC3	P39998	551 aa	Known RBP	0.72	□□□□□ -2.29
BER1	YLR412W	YFL065C	P43539	102 aa		0.72	□□□□□ -2.29
BER1	YLR412W	YDR249C	Q03787	373 aa		0.72	□□□□□ -2.29
BER1	YLR412W	YHR007C-A	Q07074	71 aa		0.72	□□□□□ -2.29
BER1	YLR412W	RHO1	P06780	209 aa	Known RBP	0.71	□□□□□ -2.3
BER1	YLR412W	URA5	P13298	226 aa	Known RBP	0.71	□□□□□ -2.3
BER1	YLR412W	KSS1	P14681	368 aa		0.71	□□□□□ -2.3
BER1	YLR412W	YMR31	P19955	123 aa		0.71	□□□□□ -2.3
BER1	YLR412W	MIC12	P38341	106 aa		0.71	□□□□□ -2.3
BER1	YLR412W	AST2	P39945	430 aa	Known RBP	0.71	□□□□□ -2.3
BER1	YLR412W	RMD6	P39975	231 aa		0.71	□□□□□ -2.3
BER1	YLR412W	YHR214C-E	Q8TGK0	99 aa		0.71	□□□□□ -2.3
BER1	YLR412W	YFR032C-B	Q8TGU2	87 aa		0.71	□□□□□ -2.3
BER1	YLR412W	THP2	O13539	261 aa	Known RBP	0.7	□□□□□ -2.3
BER1	YLR412W	RPL28	P02406	149 aa	Known RBP	0.7	□□□□□ -2.3
BER1	YLR412W	RPL27A	P0C2H6	136 aa	Known RBP	0.7	□□□□□ -2.3
BER1	YLR412W	VMA6	P32366	345 aa	Known RBP	0.7	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 27 ms