RNA–Protein interactions for RNA: YCR001W

YCR001W, Transcript of Dubious open reading frame, yeast

Gene YCR001W, Length 315 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YCR001W	YCR001W	MRPL28	P36527	147 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	YBR209W	P38311	105 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	POP4	P38336	279 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	KNH1	P50112	268 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	NSA1	P53136	463 aa	Predicted RBP	0.64	□□□□□ -2.31
YCR001W	YCR001W	SWP1	Q02795	286 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	TSC3	Q3E790	80 aa		0.64	□□□□□ -2.31
YCR001W	YCR001W	SLH1	P53327	1967 aa	Known RBP	0.64	□□□□□ -2.31
YCR001W	YCR001W	MRPL25	P23369	157 aa		0.63	□□□□□ -2.31
YCR001W	YCR001W	EAF6	P47128	113 aa		0.63	□□□□□ -2.31
YCR001W	YCR001W	YNL134C	P53912	376 aa	Known RBP	0.63	□□□□□ -2.31
YCR001W	YCR001W	FSF1	Q12029	327 aa	Known RBP	0.63	□□□□□ -2.31
YCR001W	YCR001W	RRP36	Q12481	300 aa	Predicted RBP	0.63	□□□□□ -2.31
YCR001W	YCR001W	BCY1	P07278	416 aa	Known RBP	0.62	□□□□□ -2.31
YCR001W	YCR001W	PBN1	P25580	416 aa		0.62	□□□□□ -2.31
YCR001W	YCR001W	NTF2	P33331	125 aa	Known RBP	0.62	□□□□□ -2.31
YCR001W	YCR001W	YLR173W	Q06247	608 aa		0.62	□□□□□ -2.31
YCR001W	YCR001W	RRT8	Q08219	342 aa		0.62	□□□□□ -2.31
YCR001W	YCR001W	DRS2	P39524	1355 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	TIM9	O74700	87 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	CDC10	P25342	322 aa	Known RBP	0.61	□□□□□ -2.31
YCR001W	YCR001W	YUH1	P35127	236 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	SOK1	P40317	901 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	GVP36	P40531	326 aa	Known RBP	0.61	□□□□□ -2.31
YCR001W	YCR001W	NUP84	P52891	726 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	GPM2	Q12008	311 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	ATG40	Q99325	256 aa		0.61	□□□□□ -2.31
YCR001W	YCR001W	SPT3	P06844	337 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	RPO26	P20435	155 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	SKG1	P36169	355 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	LDB7	P38210	180 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	PRM8	P53174	237 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	TDA8	Q6B2U8	126 aa		0.6	□□□□□ -2.31
YCR001W	YCR001W	YLR236C	A0A023PZG4	107 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	OPY1	P38271	328 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	SIP3	P38717	1229 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	YAE1	P47118	141 aa	Predicted RBP	0.59	□□□□□ -2.31
YCR001W	YCR001W	RCE1	Q03530	315 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	AIM36	Q03798	255 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	MCP1	Q12106	302 aa		0.59	□□□□□ -2.31
YCR001W	YCR001W	SIR2	P06700	562 aa		0.58	□□□□□ -2.32
YCR001W	YCR001W	URA6	P15700	204 aa		0.58	□□□□□ -2.32
YCR001W	YCR001W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.58	□□□□□ -2.32	not detected
YCR001W	YCR001W	EDC3	P39998	551 aa	Known RBP	0.58	□□□□□ -2.32
YCR001W	YCR001W	PRE6	P40303	254 aa	Known RBP	0.58	□□□□□ -2.32
YCR001W	YCR001W	FLX1	P40464	311 aa		0.58	□□□□□ -2.32
YCR001W	YCR001W	LIA1	P47120	325 aa	Known RBP	0.58	□□□□□ -2.32
YCR001W	YCR001W	ARO8	P53090	500 aa	Known RBP	0.58	□□□□□ -2.32
YCR001W	YCR001W	SRL4	Q03085	281 aa		0.58	□□□□□ -2.32
YCR001W	YCR001W	MED4	Q12343	284 aa		0.58	□□□□□ -2.32
YCR001W	YCR001W	CDC28	P00546	298 aa	Known RBP	0.57	□□□□□ -2.32
YCR001W	YCR001W	YHR212W-A	P0CX91	67 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	SEC11	P15367	167 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	DBF2	P22204	572 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	SEC17	P32602	292 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	YBR285W	P38354	144 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	YFL065C	P43539	102 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	CUE4	Q04201	117 aa	Predicted RBP	0.57	□□□□□ -2.32
YCR001W	YCR001W	YHR007C-A	Q07074	71 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	RAD28	Q12021	506 aa		0.57	□□□□□ -2.32
YCR001W	YCR001W	UTP30	P36144	274 aa	Known RBP	0.56	□□□□□ -2.32
YCR001W	YCR001W	FMC1	P40491	155 aa		0.56	□□□□□ -2.32
YCR001W	YCR001W	FYV6	P53913	173 aa		0.56	□□□□□ -2.32
YCR001W	YCR001W	CWC27	Q02770	301 aa		0.56	□□□□□ -2.32
YCR001W	YCR001W	CDC123	Q05791	360 aa		0.56	□□□□□ -2.32
YCR001W	YCR001W	YHL042W	P38729	150 aa		0.55	□□□□□ -2.32
YCR001W	YCR001W	VMA22	P38784	181 aa		0.55	□□□□□ -2.32
YCR001W	YCR001W	FAR7	P43592	221 aa		0.55	□□□□□ -2.32
YCR001W	YCR001W	RPC17	P47076	161 aa		0.55	□□□□□ -2.32
YCR001W	YCR001W	TCA17	P32613	152 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	APS1	P35181	156 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	BXI1	P48558	297 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	BRR6	P53062	197 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	YNL247W	P53852	767 aa	Known RBP	0.54	□□□□□ -2.32
YCR001W	YCR001W	YDR274C	P87283	123 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	YLR283W	Q05867	314 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	YIL177C	P40434	1758 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	YJL225C	P40889	1758 aa		0.54	□□□□□ -2.32
YCR001W	YCR001W	MATALPHA1	P0CY06	175 aa		0.53	□□□□□ -2.32
YCR001W	YCR001W	HMLALPHA1	P0CY07	175 aa		0.53	□□□□□ -2.32
YCR001W	YCR001W	URA5	P13298	226 aa	Known RBP	0.53	□□□□□ -2.32
YCR001W	YCR001W	YCR016W	P25617	290 aa	Known RBP	0.53	□□□□□ -2.32
YCR001W	YCR001W	SSO1	P32867	290 aa		0.53	□□□□□ -2.32
YCR001W	YCR001W	COX15	P40086	486 aa		0.53	□□□□□ -2.32
YCR001W	YCR001W	PET117	Q02771	107 aa		0.53	□□□□□ -2.32
YCR001W	YCR001W	KSS1	P14681	368 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	BET1	P22804	142 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.52	□□□□□ -2.33	not detected
YCR001W	YCR001W	AST2	P39945	430 aa	Known RBP	0.52	□□□□□ -2.33
YCR001W	YCR001W	MIC26	P50087	233 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	ALG13	P53178	202 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	YDR249C	Q03787	373 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	YOL160W	Q08321	113 aa		0.52	□□□□□ -2.33
YCR001W	YCR001W	RMD6	P39975	231 aa		0.51	□□□□□ -2.33
YCR001W	YCR001W	YER034W	P40022	185 aa	Known RBP	0.51	□□□□□ -2.33
YCR001W	YCR001W	HYR1	P40581	163 aa	Known RBP	0.51	□□□□□ -2.33
YCR001W	YCR001W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.51	□□□□□ -2.33	not detected
YCR001W	YCR001W	CFT1	Q06632	1357 aa	Known RBP	0.51	□□□□□ -2.33
YCR001W	YCR001W	FAS1	P07149	2051 aa	Known RBP	0.5	□□□□□ -2.33
YCR001W	YCR001W	MDM35	O60200	86 aa		0.5	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms