RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GZF1Q9H116 711 aaPredicted RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 MRPL17Q9NRX2 175 aaKnown RBP21.95■■□□□ 1.1
PTCD3-220ENST00000627371 PPEF2O14830 753 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 LILRB3O75022 631 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 AKAP3O75969 853 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 CA8P35219 290 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 AARSP49588 968 aaKnown RBP eCLIP21.94■■□□□ 1.1
PTCD3-220ENST00000627371 HYAL1Q12794 435 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 DUOXA2Q1HG44 320 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 RTP2Q5QGT7 225 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 LMBRD2Q68DH5 695 aaPredicted RBP21.94■■□□□ 1.1
PTCD3-220ENST00000627371 KLHL10Q6JEL2 608 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 KIAA1841Q6NSI8 718 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 FOXR2Q6PJQ5 311 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 RBM43Q6ZSC3 357 aaKnown RBP21.94■■□□□ 1.1
PTCD3-220ENST00000627371 C1orf127Q8N9H9 656 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 OR5B17Q8NGF7 314 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 PLEKHO2Q8TD55 490 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 NELFBQ8WX92 580 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 FAM84AQ96KN4 292 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 B3GALT6Q96L58 329 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 CDCA3Q99618 268 aaPredicted RBP21.94■■□□□ 1.1
PTCD3-220ENST00000627371 TTPALQ9BTX7 342 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 ITGA11Q9UKX5 1188 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 PLXNA3P51805 1871 aa21.94■■□□□ 1.1
PTCD3-220ENST00000627371 I3L4J1 428 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 CETN3O15182 167 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 TNNC2P02585 160 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 TNNI1P19237 187 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 FGFR3P22607 806 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 PAX3P23760 479 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 PSMC2P35998 433 aaKnown RBP21.93■■□□□ 1.1
PTCD3-220ENST00000627371 FKBP3Q00688 224 aaKnown RBP21.93■■□□□ 1.1
PTCD3-220ENST00000627371 PAK1Q13153 545 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 DUSP6Q16828 381 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 FAM186BQ8IYM0 893 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 CXorf38Q8TB03 319 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 PARD3BQ8TEW8 1205 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 SUSD3Q96L08 255 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 MKNK1Q9BUB5 465 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 TLE6Q9H808 572 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 CTNND2Q9UQB3 1225 aa21.93■■□□□ 1.1
PTCD3-220ENST00000627371 MTCL1Q9Y4B5 1905 aaKnown RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 BICDL2A1A5D9 508 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 FSD2A1L4K1 749 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 C2CD2LO14523 706 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 SYN3O14994 580 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 NCK2O43639 380 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 ITGB3P05106 788 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 POLR2BP30876 1174 aaKnown RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 NRIP1P48552 1158 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 LILRA4P59901 499 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 CLDN10P78369 228 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 COL19A1Q14993 1142 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 CCDC183Q5T5S1 534 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 TTI2Q6NXR4 508 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 INTS8Q75QN2 995 aaKnown RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 RBM23Q86U06 439 aaKnown RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 CEP57Q86XR8 500 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 MLKLQ8NB16 471 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 TMC2Q8TDI7 906 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 RIN2Q8WYP3 895 aaPredicted RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 PIK3R5Q8WYR1 880 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 ZNF560Q96MR9 790 aa21.92■■□□□ 1.1
PTCD3-220ENST00000627371 POP1Q99575 1024 aaKnown RBP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.92■■□□□ 1.1
PTCD3-220ENST00000627371 XIRP2A4UGR9 3374 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 LRRIQ3A6PVS8 624 aaPredicted RBP21.91■■□□□ 1.1
PTCD3-220ENST00000627371 M0QZQ0 153 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 PER2O15055 1255 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 TKTP29401 623 aaKnown RBP21.91■■□□□ 1.1
PTCD3-220ENST00000627371 GTF2F1P35269 517 aaKnown RBP eCLIP21.91■■□□□ 1.1
PTCD3-220ENST00000627371 TAF6P49848 677 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 ENPEPQ07075 957 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 SKIV2LQ15477 1246 aaKnown RBP21.91■■□□□ 1.1
PTCD3-220ENST00000627371 PDXDC1Q6P996 788 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 USP37Q86T82 979 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 EEF2KMTQ96G04 330 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 EMILIN2Q9BXX0 1053 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 RXFP1Q9HBX9 757 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 SIX4Q9UIU6 781 aa21.91■■□□□ 1.1
PTCD3-220ENST00000627371 SPTLC1O15269 473 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 SLC16A3O15427 465 aaKnown RBP21.9■■□□□ 1.1
PTCD3-220ENST00000627371 CNPP09543 421 aaKnown RBP21.9■■□□□ 1.1
PTCD3-220ENST00000627371 EPB41P11171 864 aaKnown RBP21.9■■□□□ 1.1
PTCD3-220ENST00000627371 PTMSP20962 102 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 PNPLA4P41247 253 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 AP3M2P53677 418 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 NLRP12P59046 1061 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 RBP5P82980 135 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 CREMQ03060 361 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 TRAPPC11Q7Z392 1133 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 CSGALNACT2Q8N6G5 542 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 LRRC52Q8N7C0 313 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 EFHBQ8N7U6 833 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 LNX1Q8TBB1 728 aaPredicted RBP21.9■■□□□ 1.1
PTCD3-220ENST00000627371 ZNF516Q92618 1163 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 PABPC5Q96DU9 382 aaKnown RBP21.9■■□□□ 1.1
PTCD3-220ENST00000627371 KLHL5Q96PQ7 755 aa21.9■■□□□ 1.1
PTCD3-220ENST00000627371 DUSP9Q99956 384 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms