RNA–Protein interactions for RNA: YKR029C

SET3, Transcript of Defining member of the SET3 histone deacetylase complex, yeast

Gene SET3, Length 2,256 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SET3	YKR029C	ADE6	P38972	1358 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	ADH3	P07246	375 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	TOM40	P23644	387 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	GDH2	P33327	1092 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	RCN1	P36054	211 aa		0.84	□□□□□ -2.27
SET3	YKR029C	COX15	P40086	486 aa		0.84	□□□□□ -2.27
SET3	YKR029C	YER188W	P40103	239 aa		0.84	□□□□□ -2.27
SET3	YKR029C	YMR144W	P40214	342 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	OST2	P46964	130 aa		0.84	□□□□□ -2.27
SET3	YKR029C	GON7	P46984	123 aa		0.84	□□□□□ -2.27
SET3	YKR029C	GLG2	P47011	380 aa		0.84	□□□□□ -2.27
SET3	YKR029C	YJL016W	P47072	561 aa		0.84	□□□□□ -2.27
SET3	YKR029C	ILM1	P47155	203 aa		0.84	□□□□□ -2.27
SET3	YKR029C	SNZ2	P53824	298 aa		0.84	□□□□□ -2.27
SET3	YKR029C	MIX17	Q03667	156 aa		0.84	□□□□□ -2.27
SET3	YKR029C	EMI1	Q04406	187 aa		0.84	□□□□□ -2.27
SET3	YKR029C	GRH1	Q04410	372 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	YMR114C	Q04471	368 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	YLR283W	Q05867	314 aa		0.84	□□□□□ -2.27
SET3	YKR029C	COQ10	Q08058	207 aa		0.84	□□□□□ -2.27
SET3	YKR029C	RUD3	Q12234	484 aa	Known RBP	0.84	□□□□□ -2.27
SET3	YKR029C	YPR011C	Q12251	326 aa		0.84	□□□□□ -2.27
SET3	YKR029C	ATG31	Q12421	196 aa		0.84	□□□□□ -2.27
SET3	YKR029C	NOT5	Q12514	560 aa	Predicted RBP	0.84	□□□□□ -2.27
SET3	YKR029C	FIG2	P25653	1609 aa		0.84	□□□□□ -2.27
SET3	YKR029C	YLR462W	O13556	202 aa		0.84	□□□□□ -2.28
SET3	YKR029C	RPL24B	P24000	155 aa	Known RBP	0.84	□□□□□ -2.28
SET3	YKR029C	CLB6	P32943	380 aa		0.84	□□□□□ -2.28
SET3	YKR029C	LDB7	P38210	180 aa		0.84	□□□□□ -2.28
SET3	YKR029C	GOS1	P38736	223 aa		0.84	□□□□□ -2.28
SET3	YKR029C	YHL026C	P38740	315 aa		0.84	□□□□□ -2.28
SET3	YKR029C	YEL075C	P39972	122 aa		0.84	□□□□□ -2.28
SET3	YKR029C	YER084W	P40057	128 aa		0.84	□□□□□ -2.28
SET3	YKR029C	COG3	P40094	801 aa		0.84	□□□□□ -2.28
SET3	YKR029C	TIF34	P40217	347 aa	Known RBP	0.84	□□□□□ -2.28
SET3	YKR029C	PRE6	P40303	254 aa	Known RBP	0.84	□□□□□ -2.28
SET3	YKR029C	HOC1	P47124	396 aa		0.84	□□□□□ -2.28
SET3	YKR029C	DSK2	P48510	373 aa		0.84	□□□□□ -2.28
SET3	YKR029C	RMR1	P53060	241 aa		0.84	□□□□□ -2.28
SET3	YKR029C	MDM34	P53083	459 aa		0.84	□□□□□ -2.28
SET3	YKR029C	SSU72	P53538	206 aa	Predicted RBP	0.84	□□□□□ -2.28
SET3	YKR029C	YML108W	Q03759	105 aa		0.84	□□□□□ -2.28
SET3	YKR029C	BBP1	Q12365	385 aa		0.84	□□□□□ -2.28
SET3	YKR029C	EMP46	Q12396	444 aa		0.84	□□□□□ -2.28
SET3	YKR029C	AGC1	Q12482	902 aa		0.84	□□□□□ -2.28
SET3	YKR029C	SAS5	Q99314	248 aa		0.84	□□□□□ -2.28
SET3	YKR029C	IPP1	P00817	287 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	RPL26A	P05743	127 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	DPM1	P14020	267 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	SEC22	P22214	214 aa		0.83	□□□□□ -2.28
SET3	YKR029C	SSO1	P32867	290 aa		0.83	□□□□□ -2.28
SET3	YKR029C	YER085C	P40058	173 aa		0.83	□□□□□ -2.28
SET3	YKR029C	ARC15	P40518	154 aa	RIP-Chip data	0.83	□□□□□ -2.28	not detected
SET3	YKR029C	PIR5	P46999	287 aa		0.83	□□□□□ -2.28
SET3	YKR029C	HAM1	P47119	197 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	YJR079W	P47126	109 aa		0.83	□□□□□ -2.28
SET3	YKR029C	RPL26B	P53221	127 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	CTF19	Q02732	369 aa		0.83	□□□□□ -2.28
SET3	YKR029C	YMR279C	Q03263	540 aa		0.83	□□□□□ -2.28
SET3	YKR029C	PEX12	Q04370	399 aa		0.83	□□□□□ -2.28
SET3	YKR029C	FAR8	Q05040	523 aa		0.83	□□□□□ -2.28
SET3	YKR029C	SUE1	Q06524	206 aa		0.83	□□□□□ -2.28
SET3	YKR029C	YOR186W	Q08560	144 aa		0.83	□□□□□ -2.28
SET3	YKR029C	YPL257W	Q08974	193 aa		0.83	□□□□□ -2.28
SET3	YKR029C	UTP20	P35194	2493 aa	Known RBP	0.83	□□□□□ -2.28
SET3	YKR029C	SWI1	P09547	1314 aa		0.83	□□□□□ -2.28
SET3	YKR029C	RPL40A	P0CH08	128 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	RPL40B	P0CH09	128 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	TCP1	P12612	559 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	BMH2	P34730	273 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	YBR096W	P38256	230 aa		0.82	□□□□□ -2.28
SET3	YKR029C	FIS1	P40515	155 aa		0.82	□□□□□ -2.28
SET3	YKR029C	MRPL49	P40858	161 aa	Predicted RBP	0.82	□□□□□ -2.28
SET3	YKR029C	JHD2	P47156	728 aa	Predicted RBP	0.82	□□□□□ -2.28
SET3	YKR029C	YGR026W	P53217	278 aa		0.82	□□□□□ -2.28
SET3	YKR029C	INM2	Q05533	292 aa		0.82	□□□□□ -2.28
SET3	YKR029C	SEI1	Q06058	285 aa		0.82	□□□□□ -2.28
SET3	YKR029C	YLR179C	Q06252	201 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	RDS3	Q06835	107 aa	Predicted RBP	0.82	□□□□□ -2.28
SET3	YKR029C	YOR268C	Q08734	132 aa		0.82	□□□□□ -2.28
SET3	YKR029C	YLR126C	Q12288	251 aa		0.82	□□□□□ -2.28
SET3	YKR029C	HTL1	Q9URQ5	78 aa		0.82	□□□□□ -2.28
SET3	YKR029C	FLO1	P32768	1537 aa		0.82	□□□□□ -2.28
SET3	YKR029C	SGA1	P08019	549 aa		0.82	□□□□□ -2.28
SET3	YKR029C	CCA1	P21269	546 aa		0.82	□□□□□ -2.28
SET3	YKR029C	PPA2	P28239	310 aa		0.82	□□□□□ -2.28
SET3	YKR029C	ERG24	P32462	438 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	VPS21	P36017	210 aa	Known RBP	0.82	□□□□□ -2.28
SET3	YKR029C	YKL075C	P36083	450 aa		0.82	□□□□□ -2.28
SET3	YKR029C	YAR068W	P39564	161 aa		0.82	□□□□□ -2.28
SET3	YKR029C	NSA1	P53136	463 aa	Predicted RBP	0.82	□□□□□ -2.28
SET3	YKR029C	SLM2	P53955	656 aa		0.82	□□□□□ -2.28
SET3	YKR029C	RGM1	Q00453	211 aa		0.82	□□□□□ -2.28
SET3	YKR029C	PRM15	Q03262	622 aa		0.82	□□□□□ -2.28
SET3	YKR029C	SSQ1	Q05931	657 aa	Predicted RBP	0.82	□□□□□ -2.28
SET3	YKR029C	MHT1	Q12525	324 aa		0.82	□□□□□ -2.28
SET3	YKR029C	YOR020W-A	Q3E824	90 aa		0.82	□□□□□ -2.28
SET3	YKR029C	BCY1	P07278	416 aa	Known RBP	0.81	□□□□□ -2.28
SET3	YKR029C	PUT1	P09368	476 aa		0.81	□□□□□ -2.28
SET3	YKR029C	MATALPHA1	P0CY06	175 aa		0.81	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 37.5 ms