RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W SCS7Q03529 384 aa2.23□□□□□ -2.05
PRE1YER012W DYN3Q04949 312 aa2.23□□□□□ -2.05
PRE1YER012W SPO77Q06134 477 aa2.23□□□□□ -2.05
PRE1YER012W PIN3Q06449 215 aa2.23□□□□□ -2.05
PRE1YER012W RAF1Q06891 181 aa2.23□□□□□ -2.05
PRE1YER012W YDL199CQ12407 687 aa2.23□□□□□ -2.05
PRE1YER012W PCL9Q12477 304 aa2.23□□□□□ -2.05
PRE1YER012W YHR214C-EQ8TGK0 99 aa2.23□□□□□ -2.05
PRE1YER012W UTR1P21373 530 aa2.22□□□□□ -2.05
PRE1YER012W NTG1P31378 399 aa2.22□□□□□ -2.05
PRE1YER012W SKG1P36169 355 aa2.22□□□□□ -2.05
PRE1YER012W MRPL39P36533 70 aa2.22□□□□□ -2.05
PRE1YER012W RIB1P38066 345 aa2.22□□□□□ -2.05
PRE1YER012W ECM14P38836 430 aa2.22□□□□□ -2.05
PRE1YER012W YER084WP40057 128 aa2.22□□□□□ -2.05
PRE1YER012W YMR144WP40214 342 aaKnown RBP2.22□□□□□ -2.05
PRE1YER012W AIM20P40451 204 aa2.22□□□□□ -2.05
PRE1YER012W MOB2P43563 287 aa2.22□□□□□ -2.05
PRE1YER012W KEG1P43614 200 aa2.22□□□□□ -2.05
PRE1YER012W CIN2P46670 268 aa2.22□□□□□ -2.05
PRE1YER012W LST7P53237 242 aa2.22□□□□□ -2.05
PRE1YER012W MNT4P53745 580 aa2.22□□□□□ -2.05
PRE1YER012W YPL077CQ02831 240 aa2.22□□□□□ -2.05
PRE1YER012W YPL039WQ03080 316 aa2.22□□□□□ -2.05
PRE1YER012W SSQ1Q05931 657 aaPredicted RBP2.22□□□□□ -2.05
PRE1YER012W YPR147CQ06522 304 aaKnown RBP2.22□□□□□ -2.05
PRE1YER012W GPI11Q06636 219 aa2.22□□□□□ -2.05
PRE1YER012W LOT6Q07923 191 aa2.22□□□□□ -2.05
PRE1YER012W YDL109CQ12103 647 aa2.22□□□□□ -2.05
PRE1YER012W RTC5Q12108 567 aaKnown RBP2.22□□□□□ -2.05
PRE1YER012W YLR126CQ12288 251 aa2.22□□□□□ -2.05
PRE1YER012W YDL180WQ12301 547 aa2.22□□□□□ -2.05
PRE1YER012W CAR2P07991 424 aaKnown RBP2.21□□□□□ -2.06
PRE1YER012W YOL162WP0CF19 215 aa2.21□□□□□ -2.06
PRE1YER012W PET9P18239 318 aaKnown RBP2.21□□□□□ -2.06
PRE1YER012W GIT1P25346 518 aa2.21□□□□□ -2.06
PRE1YER012W FUN26P31381 517 aa2.21□□□□□ -2.06
PRE1YER012W VPH2P32341 215 aa2.21□□□□□ -2.06
PRE1YER012W YBR220CP38318 560 aa2.21□□□□□ -2.06
PRE1YER012W PEX18P38855 283 aa2.21□□□□□ -2.06
PRE1YER012W CTR2P38865 189 aa2.21□□□□□ -2.06
PRE1YER012W PRE6P40303 254 aaKnown RBP2.21□□□□□ -2.06
PRE1YER012W YIR020CP40575 100 aa2.21□□□□□ -2.06
PRE1YER012W YCH1P42937 148 aa2.21□□□□□ -2.06
PRE1YER012W TMA22P47089 198 aaPredicted RBP2.21□□□□□ -2.06
PRE1YER012W YGL235WP53071 178 aa2.21□□□□□ -2.06
PRE1YER012W MPP6P53725 186 aaPredicted RBP2.21□□□□□ -2.06
PRE1YER012W ASI3P53983 676 aa2.21□□□□□ -2.06
PRE1YER012W KRE28Q04431 385 aa2.21□□□□□ -2.06
PRE1YER012W MSA1Q08471 629 aa2.21□□□□□ -2.06
PRE1YER012W SPC3Q12133 184 aa2.21□□□□□ -2.06
PRE1YER012W MCT1Q12283 360 aa2.21□□□□□ -2.06
PRE1YER012W RTR2Q12378 196 aa2.21□□□□□ -2.06
PRE1YER012W PFK27Q12471 397 aaPredicted RBP2.21□□□□□ -2.06
PRE1YER012W HTZ1Q12692 134 aaKnown RBP2.21□□□□□ -2.06
PRE1YER012W THP2O13539 261 aaKnown RBP2.2□□□□□ -2.06
PRE1YER012W RAD7P06779 565 aa2.2□□□□□ -2.06
PRE1YER012W MET2P08465 486 aa2.2□□□□□ -2.06
PRE1YER012W YOL163WP0CF20 169 aa2.2□□□□□ -2.06
PRE1YER012W CSM1P25651 190 aa2.2□□□□□ -2.06
PRE1YER012W MDH3P32419 343 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
PRE1YER012W TOA1P32773 286 aa2.2□□□□□ -2.06
PRE1YER012W PRY2P36110 329 aa2.2□□□□□ -2.06
PRE1YER012W MAL32P38158 584 aa2.2□□□□□ -2.06
PRE1YER012W HEK2P38199 381 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
PRE1YER012W YGR201CP42936 225 aa2.2□□□□□ -2.06
PRE1YER012W NUP57P48837 541 aa2.2□□□□□ -2.06
PRE1YER012W GET1P53192 235 aa2.2□□□□□ -2.06
PRE1YER012W YMR279CQ03263 540 aa2.2□□□□□ -2.06
PRE1YER012W RCE1Q03530 315 aa2.2□□□□□ -2.06
PRE1YER012W MGR3Q04472 501 aa2.2□□□□□ -2.06
PRE1YER012W YDR114CQ04597 100 aa2.2□□□□□ -2.06
PRE1YER012W CTS2Q06350 511 aa2.2□□□□□ -2.06
PRE1YER012W YDL114WQ07530 308 aa2.2□□□□□ -2.06
PRE1YER012W COQ10Q08058 207 aa2.2□□□□□ -2.06
PRE1YER012W FIT3Q08907 204 aa2.2□□□□□ -2.06
PRE1YER012W YOR029WQ12243 111 aa2.2□□□□□ -2.06
PRE1YER012W MRX4Q12467 430 aa2.2□□□□□ -2.06
PRE1YER012W RPL23AP0CX41 137 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W RPL23BP0CX42 137 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W RPL18AP0CX49 186 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W RPL18BP0CX50 186 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W RPS18AP0CX55 146 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W RPS18BP0CX56 146 aaPredicted RBP2.19□□□□□ -2.06
PRE1YER012W DBF2P22204 572 aa2.19□□□□□ -2.06
PRE1YER012W RPL16AP26784 199 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W PEX3P28795 441 aa2.19□□□□□ -2.06
PRE1YER012W YPS1P32329 569 aa2.19□□□□□ -2.06
PRE1YER012W VMA11P32842 164 aa2.19□□□□□ -2.06
PRE1YER012W YHR035WP38769 630 aa2.19□□□□□ -2.06
PRE1YER012W RRF1P38771 230 aa2.19□□□□□ -2.06
PRE1YER012W SSO2P39926 295 aa2.19□□□□□ -2.06
PRE1YER012W GLR1P41921 483 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W GCN20P43535 752 aaKnown RBP2.19□□□□□ -2.06
PRE1YER012W SIP18P50263 79 aa2.19□□□□□ -2.06
PRE1YER012W RRN5Q02983 363 aa2.19□□□□□ -2.06
PRE1YER012W GGA1Q06336 557 aa2.19□□□□□ -2.06
PRE1YER012W NSL1Q12143 216 aa2.19□□□□□ -2.06
PRE1YER012W GEP5Q12393 293 aa2.19□□□□□ -2.06
PRE1YER012W CCW14O13547 238 aa2.18□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 59 ms