RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C ERV25P54837 211 aaKnown RBP0.48□□□□□ -2.33
PCF11YDR228C SPG3Q04398 127 aaPredicted RBP0.48□□□□□ -2.33
PCF11YDR228C SEI1Q06058 285 aa0.48□□□□□ -2.33
PCF11YDR228C PSF1Q12488 208 aa0.48□□□□□ -2.33
PCF11YDR228C SLH1P53327 1967 aaKnown RBP0.48□□□□□ -2.33
PCF11YDR228C YKL075CP36083 450 aa0.48□□□□□ -2.33
PCF11YDR228C RIO2P40160 425 aaKnown RBP0.48□□□□□ -2.33
PCF11YDR228C TRM12Q04235 462 aa0.48□□□□□ -2.33
PCF11YDR228C ADH6Q04894 360 aaKnown RBP0.48□□□□□ -2.33
PCF11YDR228C COX20Q04935 205 aa0.48□□□□□ -2.33
PCF11YDR228C MSB2P32334 1306 aa0.47□□□□□ -2.33
PCF11YDR228C FCY2P17064 533 aa0.47□□□□□ -2.33
PCF11YDR228C DAL82P21705 255 aa0.47□□□□□ -2.33
PCF11YDR228C YBR063CP38083 404 aa0.47□□□□□ -2.33
PCF11YDR228C BIG1P38813 335 aa0.47□□□□□ -2.33
PCF11YDR228C CAT5P41735 233 aa0.47□□□□□ -2.33
PCF11YDR228C GPI8P49018 411 aa0.47□□□□□ -2.33
PCF11YDR228C CSM4Q08955 156 aa0.47□□□□□ -2.33
PCF11YDR228C RPL24AP04449 155 aaKnown RBP0.46□□□□□ -2.34
PCF11YDR228C USE1P53146 245 aa0.46□□□□□ -2.34
PCF11YDR228C CUS2P53830 285 aaPredicted RBP0.46□□□□□ -2.34
PCF11YDR228C POP3P53833 195 aaPredicted RBP0.46□□□□□ -2.34
PCF11YDR228C YMR007WQ03675 126 aa0.46□□□□□ -2.34
PCF11YDR228C MRP1P10662 321 aaKnown RBP0.46□□□□□ -2.34
PCF11YDR228C NSP1P14907 823 aaKnown RBP0.46□□□□□ -2.34
PCF11YDR228C RNA15P25299 296 aaPredicted RBP0.46□□□□□ -2.34
PCF11YDR228C BFR1P38934 470 aaKnown RBP RIP-Chip data0.46□□□□□ -2.34 RIP-Chip
PCF11YDR228C YNL010WP53981 241 aaKnown RBP0.46□□□□□ -2.34
PCF11YDR228C ABF2Q02486 183 aa0.46□□□□□ -2.34
PCF11YDR228C AIM36Q03798 255 aa0.46□□□□□ -2.34
PCF11YDR228C YNL146C-AQ3E7Z1 64 aa0.46□□□□□ -2.34
PCF11YDR228C REP2P03872 296 aa0.45□□□□□ -2.34
PCF11YDR228C PBN1P25580 416 aa0.45□□□□□ -2.34
PCF11YDR228C YHR127WP38833 243 aaKnown RBP0.45□□□□□ -2.34
PCF11YDR228C DID2P69771 204 aa0.45□□□□□ -2.34
PCF11YDR228C SDO1Q07953 250 aaKnown RBP0.45□□□□□ -2.34
PCF11YDR228C MEP1P40260 492 aa0.44□□□□□ -2.34
PCF11YDR228C ILM1P47155 203 aa0.44□□□□□ -2.34
PCF11YDR228C AIF1P52923 378 aa0.44□□□□□ -2.34
PCF11YDR228C NOP13P53883 403 aaKnown RBP RIP-Chip data0.44□□□□□ -2.34not detected
PCF11YDR228C YDR209CQ03480 137 aa0.44□□□□□ -2.34
PCF11YDR228C PDR18P53756 1333 aa0.44□□□□□ -2.34
PCF11YDR228C MSF1P08425 469 aa0.44□□□□□ -2.34
PCF11YDR228C TVP38P36164 337 aa0.44□□□□□ -2.34
PCF11YDR228C YNR077CP53758 84 aa0.44□□□□□ -2.34
PCF11YDR228C YML096WQ04489 525 aa0.44□□□□□ -2.34
PCF11YDR228C ACC1Q00955 2233 aaKnown RBP0.43□□□□□ -2.34
PCF11YDR228C TFC1P32367 649 aa0.43□□□□□ -2.34
PCF11YDR228C IRC22P40006 225 aa0.43□□□□□ -2.34
PCF11YDR228C MPP6P53725 186 aaPredicted RBP0.43□□□□□ -2.34
PCF11YDR228C RHO3Q00245 231 aaKnown RBP0.43□□□□□ -2.34
PCF11YDR228C SSQ1Q05931 657 aaPredicted RBP0.43□□□□□ -2.34
PCF11YDR228C YDL180WQ12301 547 aa0.43□□□□□ -2.34
PCF11YDR228C SNU23Q12368 194 aaPredicted RBP0.43□□□□□ -2.34
PCF11YDR228C EMC2P47133 292 aaKnown RBP0.42□□□□□ -2.34
PCF11YDR228C SAY1P53324 424 aa0.42□□□□□ -2.34
PCF11YDR228C YET1P35723 206 aa0.41□□□□□ -2.34
PCF11YDR228C UMP1P38293 148 aa0.41□□□□□ -2.34
PCF11YDR228C YFL065CP43539 102 aa0.41□□□□□ -2.34
PCF11YDR228C ERJ5P43613 295 aaPredicted RBP0.41□□□□□ -2.34
PCF11YDR228C YJR149WP47177 404 aa0.41□□□□□ -2.34
PCF11YDR228C KNH1P50112 268 aa0.41□□□□□ -2.34
PCF11YDR228C BTS1Q12051 335 aa0.41□□□□□ -2.34
PCF11YDR228C SRY1P36007 326 aa0.41□□□□□ -2.34
PCF11YDR228C RIB1P38066 345 aa0.41□□□□□ -2.34
PCF11YDR228C YAE1P47118 141 aaPredicted RBP0.41□□□□□ -2.34
PCF11YDR228C MET5P47169 1442 aa0.41□□□□□ -2.34
PCF11YDR228C URA8P38627 578 aaPredicted RBP0.4□□□□□ -2.35
PCF11YDR228C PEX17P40155 199 aa0.4□□□□□ -2.35
PCF11YDR228C YMR144WP40214 342 aaKnown RBP0.4□□□□□ -2.35
PCF11YDR228C SOK1P40317 901 aa0.4□□□□□ -2.35
PCF11YDR228C FLX1P40464 311 aa0.4□□□□□ -2.35
PCF11YDR228C FSF1Q12029 327 aaKnown RBP0.4□□□□□ -2.35
PCF11YDR228C MRPS28P21771 286 aa0.39□□□□□ -2.35
PCF11YDR228C MRPL37P36532 105 aa0.39□□□□□ -2.35
PCF11YDR228C YBR209WP38311 105 aa0.39□□□□□ -2.35
PCF11YDR228C HOC1P47124 396 aa0.39□□□□□ -2.35
PCF11YDR228C MCM22P47167 239 aa0.39□□□□□ -2.35
PCF11YDR228C LCL2Q08045 131 aa0.39□□□□□ -2.35
PCF11YDR228C YPR170W-BP0C5R9 85 aa0.38□□□□□ -2.35
PCF11YDR228C SRB4P32569 687 aa0.38□□□□□ -2.35
PCF11YDR228C YHL042WP38729 150 aa0.38□□□□□ -2.35
PCF11YDR228C SWP1Q02795 286 aa0.38□□□□□ -2.35
PCF11YDR228C LPP1Q04396 274 aa0.38□□□□□ -2.35
PCF11YDR228C YLR126CQ12288 251 aa0.38□□□□□ -2.35
PCF11YDR228C TCP1P12612 559 aaKnown RBP0.37□□□□□ -2.35
PCF11YDR228C SNC2P33328 115 aa0.37□□□□□ -2.35
PCF11YDR228C SHE2P36068 246 aaKnown RBP RIP-Chip data0.37□□□□□ -2.35not detected
PCF11YDR228C MRPL17P36528 281 aa0.37□□□□□ -2.35
PCF11YDR228C SIP3P38717 1229 aa0.37□□□□□ -2.35
PCF11YDR228C EDC3P39998 551 aaKnown RBP0.37□□□□□ -2.35
PCF11YDR228C GAS3Q03655 524 aa0.37□□□□□ -2.35
PCF11YDR228C YML108WQ03759 105 aa0.37□□□□□ -2.35
PCF11YDR228C YLR156WP0CE96 114 aa0.37□□□□□ -2.35
PCF11YDR228C YLR159WP0CE97 114 aa0.37□□□□□ -2.35
PCF11YDR228C YLR161WP0CE98 114 aa0.37□□□□□ -2.35
PCF11YDR228C YHR212W-AP0CX91 67 aa0.37□□□□□ -2.35
PCF11YDR228C OPY1P38271 328 aa0.37□□□□□ -2.35
PCF11YDR228C ARO8P53090 500 aaKnown RBP0.37□□□□□ -2.35
PCF11YDR228C ATG40Q99325 256 aa0.37□□□□□ -2.35
Retrieved 100 of 5,963 RNA–protein pairs in 148.4 ms