RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RUSC1Q9BVN2 902 aa14.89□□□□□ -0.03
TRIM28-211ENST00000597968 TARS2Q9BW92 718 aaKnown RBP14.89□□□□□ -0.03
TRIM28-211ENST00000597968 CXCL16Q9H2A7 254 aa14.89□□□□□ -0.03
TRIM28-211ENST00000597968 ODF2LQ9ULJ1 636 aa14.89□□□□□ -0.03
TRIM28-211ENST00000597968 USP20Q9Y2K6 914 aa14.89□□□□□ -0.03
TRIM28-211ENST00000597968 NUB1Q9Y5A7 615 aa14.89□□□□□ -0.03
TRIM28-211ENST00000597968 ZNF197O14709 1029 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 CCL16O15467 120 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 CLDN3O15551 220 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 ADAM12O43184 909 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 ECI2O75521 394 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 LRG1P02750 347 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 MYBP10242 640 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 PTPN2P17706 415 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 CYP3A5P20815 502 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 SLC12A3P55017 1021 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 MCL1Q07820 350 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 NOLC1Q14978 699 aaKnown RBP eCLIP14.88□□□□□ -0.03
TRIM28-211ENST00000597968 VARS2Q5ST30 1063 aaKnown RBP14.88□□□□□ -0.03
TRIM28-211ENST00000597968 ASCL5Q7RTU5 278 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 CEP120Q8N960 986 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 C3orf58Q8NDZ4 430 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 FGF14Q92915 247 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 SUSD3Q96L08 255 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 NELL2Q99435 816 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 DDX23Q9BUQ8 820 aaKnown RBP14.88□□□□□ -0.03
TRIM28-211ENST00000597968 UPF2Q9HAU5 1272 aaKnown RBP14.88□□□□□ -0.03
TRIM28-211ENST00000597968 DLGAP2Q9P1A6 1054 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 DNMT3BQ9UBC3 853 aaKnown RBP14.88□□□□□ -0.03
TRIM28-211ENST00000597968 CA14Q9ULX7 337 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 POLIQ9UNA4 740 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 DOCK8Q8NF50 2099 aa14.88□□□□□ -0.03
TRIM28-211ENST00000597968 PP2D1A8MPX8 630 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 H3BQV1 296 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 SLC16A4O15374 487 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 XPOTO43592 962 aaKnown RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 MAPTP10636 758 aaKnown RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 ROR1Q01973 937 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 SOX4Q06945 474 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 MCTP1Q6DN14 999 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 ZNF280DQ6N043 979 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 PARM1Q6UWI2 310 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 NPAS3Q8IXF0 933 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 PJA1Q8NG27 643 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 ZMAT2Q96NC0 199 aaKnown RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 GOLGA2P5Q9HBQ8 144 aa14.87□□□□□ -0.03
TRIM28-211ENST00000597968 MRPS23Q9Y3D9 190 aaKnown RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-211ENST00000597968 KANSL1LA0AUZ9 987 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 RHOP08100 348 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 CLTAP09496 248 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 PLA2G4BP0C869 781 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 CDC25AP30304 524 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 LRPAP1P30533 357 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 BRCC3P46736 316 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 NCKAP1LP55160 1127 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 OSTNP61366 133 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 GPC5P78333 572 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 ZNF528Q3MIS6 628 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 TMEM119Q4V9L6 283 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 KCNK18Q7Z418 384 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 FRMD5Q7Z6J6 570 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 C1orf210Q8IVY1 113 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 CD302Q8IX05 232 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 ELMOD1Q8N336 334 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 ELSPBP1Q96BH3 223 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 CALML4Q96GE6 196 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 TMX3Q96JJ7 454 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 POLD4Q9HCU8 107 aa14.86□□□□□ -0.03
TRIM28-211ENST00000597968 ZFHX2Q9C0A1 2572 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-211ENST00000597968 WDR27A2RRH5 827 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 VWA3AA6NCI4 1184 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 M0QZQ0 153 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 PRRG1O14668 218 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 NCAM2O15394 837 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 PIGRP01833 764 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 NTHL1P78549 312 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 POU5F1Q01860 360 aaKnown RBP14.85□□□□□ -0.03
TRIM28-211ENST00000597968 MLF2Q15773 248 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-211ENST00000597968 SLC10A6Q3KNW5 377 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 SLC44A4Q53GD3 710 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 IQCEQ6IPM2 695 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 BRAPQ7Z569 592 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 ITFG1Q8TB96 612 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 DNASE1L2Q92874 299 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 PNMA5Q96PV4 448 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 BCO2Q9BYV7 579 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 GPR88Q9GZN0 384 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 TRPV5Q9NQA5 729 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 AFF4Q9UHB7 1163 aaKnown RBP14.85□□□□□ -0.03
TRIM28-211ENST00000597968 FBXL5Q9UKA1 691 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 FBXO4Q9UKT5 387 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 UBQLN1Q9UMX0 589 aaKnown RBP14.85□□□□□ -0.03
TRIM28-211ENST00000597968 PCDHB8Q9UN66 801 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 VWA8A3KMH1 1905 aa14.85□□□□□ -0.03
TRIM28-211ENST00000597968 TTC26A0AVF1 554 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 SFI1A8K8P3 1242 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 OAZ2O95190 189 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 CD2BP2O95400 341 aaKnown RBP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 LMNAP02545 664 aaKnown RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms