RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 KNOP1Q1ED39 458 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 JADE1Q6IE81 842 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 ELMSAN1Q6PJG2 1045 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 CEP57Q86XR8 500 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 NELFCDQ8IXH7 590 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 GPD1LQ8N335 351 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 ENGASEQ8NFI3 743 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 RIN2Q8WYP3 895 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 CBWD1Q9BRT8 395 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 PCIF1Q9H4Z3 704 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 RXFP1Q9HBX9 757 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 DPP7Q9UHL4 492 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 CD207Q9UJ71 328 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 C2CD2Q9Y426 696 aa18.76■□□□□ 0.59
SHKBP1-212ENST00000596163 ZNF233A6NK53 670 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 H3BQ06 376 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 RHOBTB3O94955 611 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SMC2O95347 1197 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 C1RP00736 705 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 HOXB8P17481 243 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 HOXD13P35453 343 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SPAG1Q07617 926 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 STK4Q13043 487 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SNW1Q13573 536 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 KCNB1Q14721 858 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SURF1Q15526 300 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SPATA1Q5VX52 437 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 LLGL2Q6P1M3 1020 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 CRELD2Q6UXH1 353 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 BRSK2Q8IWQ3 736 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 NOC3LQ8WTT2 800 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 CACTINQ8WUQ7 758 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 SAAL1Q96ER3 474 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 RMND1Q9NWS8 449 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 RBAKQ9NYW8 714 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 FNIP2Q9P278 1114 aa18.75■□□□□ 0.59
SHKBP1-212ENST00000596163 TDRD15B5MCY1 1934 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 TULP1O00294 542 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 KINO60870 393 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 CNPP09543 421 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 KCNC3Q14003 757 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 ELOA2Q8IYF1 753 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 PIK3R5Q8WYR1 880 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 IPO9Q96P70 1041 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 GTPBP4Q9BZE4 634 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 AGPAT3Q9NRZ7 376 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 DZANK1Q9NVP4 752 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 HSPBP1Q9NZL4 362 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 TUBGCP4Q9UGJ1 667 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 HCFC2Q9Y5Z7 792 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 MYO7AQ13402 2215 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 TCHHQ07283 1943 aa18.74■□□□□ 0.59
SHKBP1-212ENST00000596163 GOLGA8IPA6NC78 632 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 GOLGA8JA6NMD2 632 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 SYN3O14994 580 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 TGFB1I1O43294 461 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 TBX10O75333 385 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 PRR29P0C7W0 189 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 BMP1P13497 986 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 FGFR3P22607 806 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 MCM4P33991 863 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 KCNQ1P51787 676 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 DLX2Q07687 328 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 PTCRAQ6ISU1 281 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 ANKRD54Q6NXT1 300 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 C12orf56Q8IXR9 622 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 XXYLT1Q8NBI6 393 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 KIAA0895Q8NCT3 520 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 SLC22A17Q8WUG5 538 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 MSLNLQ96KJ4 702 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 CLEC1BQ9P126 229 aa18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 BARX2Q9UMQ3 279 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-212ENST00000596163 PDXKO00764 312 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 CLIC2O15247 247 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 TEX28O15482 410 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 GLP2RO95838 553 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 NFICP08651 508 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 BRCC3P46736 316 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 UBE2HP62256 183 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 SMAD4Q13485 552 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 PSMD5Q16401 504 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 RTP2Q5QGT7 225 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 CD300LGQ6UXG3 332 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 ANKS3Q6ZW76 656 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 C3orf58Q8NDZ4 430 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 APPL2Q8NEU8 664 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 VN1R2Q8NFZ6 395 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 B3GALT6Q96L58 329 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 GSDMAQ96QA5 445 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 DPP3Q9NY33 737 aa18.72■□□□□ 0.59
SHKBP1-212ENST00000596163 ARHGEF37A1IGU5 675 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 GRXCR2A6NFK2 248 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 SPDYE4A6NLX3 237 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 H7C4K7 107 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 CALUO43852 315 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 GLUD1P00367 558 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 CYP2J2P51589 502 aa18.71■□□□□ 0.59
SHKBP1-212ENST00000596163 CLCN4P51793 760 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms