RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.1□□□□□ -0.15
CLK3-224ENST00000568605 BRSK2Q8IWQ3 736 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 NELFCDQ8IXH7 590 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 RABGGTAQ92696 567 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 SAAL1Q96ER3 474 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 CBWD1Q9BRT8 395 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 FAM213AQ9BRX8 229 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 TTPALQ9BTX7 342 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 GTPBP4Q9BZE4 634 aaKnown RBP14.1□□□□□ -0.15
CLK3-224ENST00000568605 RBAKQ9NYW8 714 aaPredicted RBP14.1□□□□□ -0.15
CLK3-224ENST00000568605 TUBGCP4Q9UGJ1 667 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 DPP7Q9UHL4 492 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 ARHGEF37A1IGU5 675 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 SPDYE4A6NLX3 237 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 F8W810 466 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 PER2O15055 1255 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 RHOBTB3O94955 611 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 EFEMP2O95967 443 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 ADRB2P07550 413 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 PRR29P0C7W0 189 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 PAX3P23760 479 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 LRPAP1P30533 357 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 MCM4P33991 863 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 GTF2F1P35269 517 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLK3-224ENST00000568605 TFF2Q03403 129 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 ADAM15Q13444 863 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 SURF1Q15526 300 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 KNOP1Q1ED39 458 aaKnown RBP14.09□□□□□ -0.15
CLK3-224ENST00000568605 JADE1Q6IE81 842 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 KIAA0895Q8NCT3 520 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 GLIS3Q8NEA6 775 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 AUTS2Q8WXX7 1259 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 RIN2Q8WYP3 895 aaPredicted RBP14.09□□□□□ -0.15
CLK3-224ENST00000568605 C18orf25Q96B23 403 aaPredicted RBP14.09□□□□□ -0.15
CLK3-224ENST00000568605 IPO9Q96P70 1041 aaKnown RBP14.09□□□□□ -0.15
CLK3-224ENST00000568605 ASB2Q96Q27 587 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 GPR62Q9BZJ7 368 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 IKZF4Q9H2S9 585 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 CHST7Q9NS84 486 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 DZANK1Q9NVP4 752 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 HSPBP1Q9NZL4 362 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 CD207Q9UJ71 328 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 MYH10P35580 1976 aa14.09□□□□□ -0.15
CLK3-224ENST00000568605 ZNF233A6NK53 670 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 SYN3O14994 580 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 LINC01565O15544 149 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 MEFVO15553 781 aaPredicted RBP14.08□□□□□ -0.16
CLK3-224ENST00000568605 NFICP08651 508 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 HOXB8P17481 243 aaPredicted RBP14.08□□□□□ -0.16
CLK3-224ENST00000568605 KLRC2P26717 231 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 UBE2HP62256 183 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 SPAG1Q07617 926 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 STK4Q13043 487 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 SMAD4Q13485 552 aaKnown RBP14.08□□□□□ -0.16
CLK3-224ENST00000568605 SNW1Q13573 536 aaKnown RBP14.08□□□□□ -0.16
CLK3-224ENST00000568605 PSMD5Q16401 504 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 KIAA0319Q5VV43 1072 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 SPATA1Q5VX52 437 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 TMEM184AQ6ZMB5 413 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 CEP57Q86XR8 500 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 C12orf56Q8IXR9 622 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 XXYLT1Q8NBI6 393 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 ENGASEQ8NFI3 743 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 CACTINQ8WUQ7 758 aaKnown RBP14.08□□□□□ -0.16
CLK3-224ENST00000568605 PIK3R5Q8WYR1 880 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 SMARCE1Q969G3 411 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 ZNF560Q96MR9 790 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 PCIF1Q9H4Z3 704 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 AGPAT3Q9NRZ7 376 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 FNIP2Q9P278 1114 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 HCFC2Q9Y5Z7 792 aa14.08□□□□□ -0.16
CLK3-224ENST00000568605 H3BQ06 376 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 TULP1O00294 542 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 CLASP2O75122 1294 aaKnown RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 GLP2RO95838 553 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 GLUD1P00367 558 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 CNPP09543 421 aaKnown RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 TMEM191BP0C7N4 346 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 HOXD13P35453 343 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 LTBRP36941 435 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 CYP2J2P51589 502 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 PNOCQ13519 176 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 ZBTB6Q15916 424 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 SNRNP35Q16560 246 aaKnown RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 RTP2Q5QGT7 225 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 PTCRAQ6ISU1 281 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 LLGL2Q6P1M3 1020 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 CRELD2Q6UXH1 353 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 ANKS3Q6ZW76 656 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 ELOA2Q8IYF1 753 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 C3orf58Q8NDZ4 430 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 GBP4Q96PP9 640 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 KLHL5Q96PQ7 755 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 GSDMAQ96QA5 445 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 RXFP1Q9HBX9 757 aa14.07□□□□□ -0.16
CLK3-224ENST00000568605 BARX2Q9UMQ3 279 aaPredicted RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 R3HCC1Q9Y3T6 440 aaKnown RBP14.07□□□□□ -0.16
CLK3-224ENST00000568605 PTPRDP23468 1912 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 GOLGA8IPA6NC78 632 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 GOLGA8JA6NMD2 632 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms