RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TRMT13Q9NUP7 481 aaKnown RBP24.36■■□□□ 1.49
CDX1-201ENST00000231656 INTUQ9ULD6 942 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 TNFSF13BQ9Y275 285 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 TSPAN1O60635 241 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 LDHAP00338 332 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 ARF4P18085 180 aaPredicted RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 NAP1L1P55209 391 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 MRPS6P82932 125 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 SNX17Q15036 470 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 ZBTB33Q86T24 672 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 NOA1Q8NC60 698 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 MSANTD4Q8NCY6 345 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 U2AF1L4Q8WU68 220 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 CAPZA3Q96KX2 299 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 CELF4Q9BZC1 486 aaKnown RBP24.35■■□□□ 1.49
CDX1-201ENST00000231656 ANKZF1Q9H8Y5 726 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 HYOU1Q9Y4L1 999 aa24.35■■□□□ 1.49
CDX1-201ENST00000231656 A0A0U1RQG5 324 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 PALMO75781 387 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 RPLP2P05387 115 aaKnown RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 ACOT2P49753 483 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 CLDN10P78369 228 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 EEF1DP3Q658K8 133 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 CRELD2Q6UXH1 353 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 CDR2LQ86X02 465 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 DNAAF5Q86Y56 855 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 KAT5Q92993 513 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 CPB2Q96IY4 423 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 KREMEN1Q96MU8 473 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 OSBPL9Q96SU4 736 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 PARD6BQ9BYG5 372 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 ARGLU1Q9NWB6 273 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 ZNF446Q9NWS9 450 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 GRID2IPA4D2P6 1211 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 PDE2AO00408 941 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 NCK2O43639 380 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 FAM189A1O60320 539 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 H2AFZP0C0S5 128 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 HARSP12081 509 aaKnown RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 PSMD6Q15008 389 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 ZNF568Q3ZCX4 644 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 C15orf39Q6ZRI6 1047 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 H2AFVQ71UI9 128 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 SV2AQ7L0J3 742 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 CREG2Q8IUH2 290 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 GLYCTKQ8IVS8 523 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 TAS1R2Q8TE23 839 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 CCDC94Q9BW85 323 aaPredicted RBP24.34■■□□□ 1.49
CDX1-201ENST00000231656 NOD1Q9Y239 953 aa24.34■■□□□ 1.49
CDX1-201ENST00000231656 M0QZ92 97 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 TCP1P17987 556 aaKnown RBP24.33■■□□□ 1.49
CDX1-201ENST00000231656 PTK7Q13308 1070 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 PCBP1Q15365 356 aaKnown RBP eCLIP24.33■■□□□ 1.49
CDX1-201ENST00000231656 ZBTB41Q5SVQ8 909 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 CATSPER4Q7RTX7 472 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 FBXL13Q8NEE6 735 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 ARMC5Q96C12 935 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 RPGRIP1Q96KN7 1286 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 PDZD7Q9H5P4 517 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 CDY2AQ9Y6F7 541 aa24.33■■□□□ 1.49
CDX1-201ENST00000231656 ARVCFO00192 962 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 OGTO15294 1046 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 DLATP10515 647 aaKnown RBP24.32■■□□□ 1.48
CDX1-201ENST00000231656 SEZ6Q53EL9 994 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 ZNF572Q7Z3I7 529 aaPredicted RBP24.32■■□□□ 1.48
CDX1-201ENST00000231656 HELQQ8TDG4 1101 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 COG1Q8WTW3 980 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 ZNF516Q92618 1163 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 CRISPLD2Q9H0B8 497 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 CDT1Q9H211 546 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 RAB20Q9NX57 234 aa24.32■■□□□ 1.48
CDX1-201ENST00000231656 A0A0A6YYK5 440 aaPredicted RBP24.31■■□□□ 1.48
CDX1-201ENST00000231656 A0A1B0GUA9 196 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 FAM71AQ8IYT1 594 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 DHX38Q92620 1227 aaKnown RBP24.31■■□□□ 1.48
CDX1-201ENST00000231656 AGPAT1Q99943 283 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 TRPV2Q9Y5S1 764 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 B4GALT4O60513 344 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 SGPL1O95470 568 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 CHRNA1P02708 482 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 CTSHP09668 335 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 TNFAIP3P21580 790 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 HOXA11P31270 313 aaPredicted RBP24.31■■□□□ 1.48
CDX1-201ENST00000231656 THPOP40225 353 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 GALCP54803 685 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 WNT7BP56706 349 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 MEI1Q5TIA1 1274 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 PPM1KQ8N3J5 372 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 SHC3Q92529 594 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 NT5C1BQ96P26 610 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 SENP6Q9GZR1 1112 aaPredicted RBP24.31■■□□□ 1.48
CDX1-201ENST00000231656 TRPV6Q9H1D0 765 aa24.31■■□□□ 1.48
CDX1-201ENST00000231656 TNFSF9P41273 254 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 MFAP3P55082 362 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 MGAT3Q09327 533 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 CAGE1Q8TC20 777 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 SLC20A1Q8WUM9 679 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 PNKPQ96T60 521 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 SEZ6LQ9BYH1 1024 aa24.3■■□□□ 1.48
CDX1-201ENST00000231656 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms