RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	FRE8	Q12209	686 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	NSP1	P14907	823 aa	Known RBP	4.67	□□□□□ -1.66
NUP1	YOR098C	SNX4	P47057	423 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	VPS25	P47142	202 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	OST3	P48439	350 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	NQM1	P53228	333 aa	Predicted RBP	4.67	□□□□□ -1.66
NUP1	YOR098C	GRX8	Q05926	109 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	PEX30	Q06169	523 aa		4.67	□□□□□ -1.66
NUP1	YOR098C	YGK3	Q12222	375 aa	Predicted RBP	4.67	□□□□□ -1.66
NUP1	YOR098C	UBR1	P19812	1950 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YCR022C	P25620	114 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	ANR2	P36090	516 aa	Predicted RBP	4.66	□□□□□ -1.66
NUP1	YOR098C	IRC18	P47056	224 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	JAC1	P53193	184 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YGR042W	P53227	271 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	RHO3	Q00245	231 aa	Known RBP	4.66	□□□□□ -1.66
NUP1	YOR098C	GTT2	Q12390	233 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	SPT3	P06844	337 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	DBF2	P22204	572 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	INO2	P26798	304 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	AVT5	P38176	459 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	APD1	P38281	316 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	LSM12	P38828	187 aa	Known RBP	4.66	□□□□□ -1.66
NUP1	YOR098C	PET8	P38921	284 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	GUF1	P46943	645 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YJL016W	P47072	561 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	NBP35	P52920	328 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YNL033W	P53964	284 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YNL019C	P53975	284 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	NOC4	Q06512	552 aa	Predicted RBP	4.66	□□□□□ -1.66
NUP1	YOR098C	YMR030W-A	Q3E760	96 aa		4.66	□□□□□ -1.66
NUP1	YOR098C	YOL163W	P0CF20	169 aa		4.65	□□□□□ -1.66
NUP1	YOR098C	YHI9	P38765	294 aa		4.65	□□□□□ -1.66
NUP1	YOR098C	COX4	P04037	155 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	DPM1	P14020	267 aa	Known RBP	4.65	□□□□□ -1.67
NUP1	YOR098C	AGA1	P32323	725 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	YJR056C	P47115	236 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	YDR248C	Q03786	193 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	LOA1	Q06508	300 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	COQ10	Q08058	207 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	CUP2	P15315	225 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	RFS1	P38234	210 aa	Known RBP	4.65	□□□□□ -1.67
NUP1	YOR098C	BRR6	P53062	197 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	RCF2	P53721	224 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	DID2	P69771	204 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	SCS7	Q03529	384 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	YLR446W	Q06204	433 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	YLR031W	Q07978	186 aa		4.65	□□□□□ -1.67
NUP1	YOR098C	PMD1	P32634	1753 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	GRX5	Q02784	150 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	ELP3	Q02908	557 aa	Known RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	CSN9	Q03981	162 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	YOR289W	Q12012	251 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	NSL1	Q12143	216 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	FOL3	Q12676	427 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	RPS14A	P06367	137 aa	Known RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	THI80	P35202	319 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	SKG1	P36169	355 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	WSC4	P38739	605 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	RPS14B	P39516	138 aa	Known RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	YER137C	P40083	148 aa	Known RBP	4.64	□□□□□ -1.67
NUP1	YOR098C	TOS8	P53147	276 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	GAL83	Q04739	417 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	TPO4	Q12256	659 aa		4.64	□□□□□ -1.67
NUP1	YOR098C	RPS28B	P0C0X0	67 aa	Known RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	CTA1	P15202	515 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	CCA1	P21269	546 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	IFM1	P25038	676 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	RPL16A	P26784	199 aa	Known RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	YKR041W	P36134	250 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	AVT1	P47082	602 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	AIF1	P52923	378 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YGL039W	P53183	348 aa	Known RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	FYV6	P53913	173 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	MCT1	Q12283	360 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YDL199C	Q12407	687 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	PRM4	Q12498	284 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	MED11	Q99278	115 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	TIM9	O74700	87 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	MRPL3	P36516	390 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	SYF2	P53277	215 aa	Predicted RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	NUP49	Q02199	472 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	GMC1	Q04399	608 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	MRX9	Q07349	420 aa	Known RBP	4.63	□□□□□ -1.67
NUP1	YOR098C	AEP1	P32493	518 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	ASK1	P35734	292 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	SRY1	P36007	326 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	CYC2	P38909	366 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YER076C	P40049	302 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YIL029C	P40538	142 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YGL204C	P53089	101 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	PDR17	P53844	350 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	SUR7	P54003	302 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	YMR181C	Q03231	154 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	AGC1	Q12482	902 aa		4.63	□□□□□ -1.67
NUP1	YOR098C	RPL23A	P0CX41	137 aa	Known RBP	4.62	□□□□□ -1.67
NUP1	YOR098C	RPL23B	P0CX42	137 aa	Known RBP	4.62	□□□□□ -1.67
NUP1	YOR098C	SEC1	P30619	724 aa	Known RBP	4.62	□□□□□ -1.67
NUP1	YOR098C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms