RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	YIL169C	P40442	995 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	ATG27	P46989	271 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	ADO1	P47143	340 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	MTQ2	Q03920	221 aa	Predicted RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	YLR456W	Q06199	204 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	ATG5	Q12380	294 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	RPP1A	P05318	106 aa	Predicted RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	VMA16	P23968	213 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	ADH7	P25377	361 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	LAC1	P28496	418 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	OAR1	P35731	278 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	VBA2	P38358	474 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	IRC24	P40580	263 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	PAU5	P43575	122 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	PUS4	P48567	403 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	PBP1	P53297	722 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	RPL6A	Q02326	176 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	MSC1	Q03104	513 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	CWC21	Q03375	135 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	SNO4	Q04902	237 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	YPR109W	Q06104	294 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	YPR174C	Q06616	221 aa	Predicted RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	SCP1	Q08873	200 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	HSP33	Q08914	237 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	HSP32	Q08992	237 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	SOD2	P00447	233 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	RRN10	P38204	145 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	CDS1	P38221	457 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	GPI2	P46961	280 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	SKP1	P52286	194 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	HCH1	P53834	153 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	IZH2	Q12442	317 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	YLR111W	Q12528	110 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	MEX67	Q99257	599 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	CKA1	P15790	372 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YIL165C	P40446	119 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	FLX1	P40464	311 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YJR012C	P47087	207 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	EMC4	P53073	190 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	NSA1	P53136	463 aa	Predicted RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	LEE1	Q02799	301 aa	Known RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	MET31	Q03081	177 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	RCE1	Q03530	315 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	NMA1	Q06178	401 aa	Known RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	MRX9	Q07349	420 aa	Known RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	BSC6	Q08280	497 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YPR011C	Q12251	326 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YPR108W-A	Q3E7B3	70 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YIL046W-A	Q3E7Z4	54 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	SCEI	P03882	235 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	DCG1	P32460	244 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	GPX1	P36014	167 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	NEM1	P38757	446 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	SAM37	P50110	327 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	HOF1	Q05080	669 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	RBS1	Q05672	457 aa	Known RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	DCI1	Q08558	271 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	FRE7	Q12333	620 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	TIR1	P10863	254 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	CPR1	P14832	162 aa	Known RBP	3.12	□□□□□ -1.91
SSM4	YIL030C	ERG2	P32352	222 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YBR292C	P38357	123 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	AIM2	P39721	246 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	LRO1	P40345	661 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YPS6	P40583	537 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	OST3	P48439	350 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	CPD1	P53314	239 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	RSM23	Q01163	450 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	PRM4	Q12498	284 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	YDR461C-A	Q2V2P7	80 aa		3.12	□□□□□ -1.91
SSM4	YIL030C	NPR1	P22211	790 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	YBR197C	P38306	217 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	PIG2	P40187	538 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	AZF1	P41696	914 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	SGF73	P53165	657 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	MPA43	P53583	542 aa	Predicted RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	YNR014W	P53719	212 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	RPN9	Q04062	393 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	CDC28	P00546	298 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	CPA1	P07258	411 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	RPS22A	P0C0W1	130 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	PMU1	P36069	295 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	PET191	Q02772	108 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	FSH2	Q05015	223 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	FRQ1	Q06389	190 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	YDR262W	Q12331	272 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	REC114	P32841	428 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	RPS26B	P39939	119 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	YER010C	P40011	234 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	YIL077C	P40508	320 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	NAT4	Q04751	285 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	AIM6	Q07716	390 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	LEU9	Q12166	604 aa	Known RBP	3.11	□□□□□ -1.91
SSM4	YIL030C	YPR071W	Q12346	211 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	SRN2	Q99176	213 aa		3.11	□□□□□ -1.91
SSM4	YIL030C	HIP1	P06775	603 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	YCR007C	P25354	239 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	COQ3	P27680	312 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	PPA2	P28239	310 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	MRP20	P32387	263 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 29 ms