RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W ECM29P38737 1868 aa3.81□□□□□ -1.8
PRE9YGR135W GAL4P04386 881 aa3.81□□□□□ -1.8
PRE9YGR135W OPI3P05375 206 aa3.81□□□□□ -1.8
PRE9YGR135W YLL053CP0CD98 152 aa3.81□□□□□ -1.8
PRE9YGR135W ITR1P30605 584 aa3.81□□□□□ -1.8
PRE9YGR135W PAU2P32612 120 aa3.81□□□□□ -1.8
PRE9YGR135W SPT10P35208 640 aa3.81□□□□□ -1.8
PRE9YGR135W SCO2P38072 301 aa3.81□□□□□ -1.8
PRE9YGR135W DTR1P38125 572 aa3.81□□□□□ -1.8
PRE9YGR135W CHL4P38907 458 aa3.81□□□□□ -1.8
PRE9YGR135W ASP1P38986 381 aaPredicted RBP3.81□□□□□ -1.8
PRE9YGR135W PRP39P39682 629 aaKnown RBP3.81□□□□□ -1.8
PRE9YGR135W FAU1P40099 211 aa3.81□□□□□ -1.8
PRE9YGR135W POG1P40473 351 aa3.81□□□□□ -1.8
PRE9YGR135W VPS25P47142 202 aa3.81□□□□□ -1.8
PRE9YGR135W YJR111CP47148 283 aaKnown RBP3.81□□□□□ -1.8
PRE9YGR135W YJR149WP47177 404 aa3.81□□□□□ -1.8
PRE9YGR135W YGL185CP53100 379 aa3.81□□□□□ -1.8
PRE9YGR135W PCP1P53259 346 aa3.81□□□□□ -1.8
PRE9YGR135W FMP41P53889 259 aaKnown RBP3.81□□□□□ -1.8
PRE9YGR135W PGA1P53896 198 aa3.81□□□□□ -1.8
PRE9YGR135W DIC1Q06143 298 aa3.81□□□□□ -1.8
PRE9YGR135W SDO1Q07953 250 aaKnown RBP3.81□□□□□ -1.8
PRE9YGR135W BTS1Q12051 335 aa3.81□□□□□ -1.8
PRE9YGR135W DCN1Q12395 269 aa3.81□□□□□ -1.8
PRE9YGR135W CBP6P07253 162 aaPredicted RBP3.8□□□□□ -1.8
PRE9YGR135W YOL163WP0CF20 169 aa3.8□□□□□ -1.8
PRE9YGR135W MRP1P10662 321 aaKnown RBP3.8□□□□□ -1.8
PRE9YGR135W NAM2P11325 894 aa3.8□□□□□ -1.8
PRE9YGR135W HNM1P19807 563 aa3.8□□□□□ -1.8
PRE9YGR135W ZRC1P20107 442 aa3.8□□□□□ -1.8
PRE9YGR135W IFM1P25038 676 aa3.8□□□□□ -1.8
PRE9YGR135W BUB3P26449 341 aa3.8□□□□□ -1.8
PRE9YGR135W ACP1P32463 125 aa3.8□□□□□ -1.8
PRE9YGR135W PAD1P33751 242 aaKnown RBP RIP-Chip data3.8□□□□□ -1.8not detected
PRE9YGR135W HMT1P38074 348 aa3.8□□□□□ -1.8
PRE9YGR135W AVT5P38176 459 aa3.8□□□□□ -1.8
PRE9YGR135W ATG8P38182 117 aaRIP-Chip data3.8□□□□□ -1.8not detected
PRE9YGR135W RPS20P38701 121 aaKnown RBP3.8□□□□□ -1.8
PRE9YGR135W YPS6P40583 537 aa3.8□□□□□ -1.8
PRE9YGR135W UFE1P41834 346 aa3.8□□□□□ -1.8
PRE9YGR135W SPG5P42933 373 aa3.8□□□□□ -1.8
PRE9YGR135W BAT2P47176 376 aaKnown RBP3.8□□□□□ -1.8
PRE9YGR135W RIB4P50861 169 aaPredicted RBP3.8□□□□□ -1.8
PRE9YGR135W NRK1P53915 240 aa3.8□□□□□ -1.8
PRE9YGR135W MTQ1P53944 314 aa3.8□□□□□ -1.8
PRE9YGR135W RHO4Q00246 291 aa3.8□□□□□ -1.8
PRE9YGR135W MRP51Q02950 344 aa3.8□□□□□ -1.8
PRE9YGR135W UTP15Q04305 513 aaKnown RBP3.8□□□□□ -1.8
PRE9YGR135W YPR114WQ06107 315 aa3.8□□□□□ -1.8
PRE9YGR135W RRG8Q06109 277 aa3.8□□□□□ -1.8
PRE9YGR135W BSP1Q06604 576 aa3.8□□□□□ -1.8
PRE9YGR135W MHR1Q06630 226 aa3.8□□□□□ -1.8
PRE9YGR135W YOR385WQ08909 290 aa3.8□□□□□ -1.8
PRE9YGR135W YOR387CQ08910 206 aa3.8□□□□□ -1.8
PRE9YGR135W SPC3Q12133 184 aa3.8□□□□□ -1.8
PRE9YGR135W YLR046CQ12253 270 aa3.8□□□□□ -1.8
PRE9YGR135W RRI1Q12468 440 aa3.8□□□□□ -1.8
PRE9YGR135W FSH3Q99369 266 aa3.8□□□□□ -1.8
PRE9YGR135W PHO2P07269 559 aa3.79□□□□□ -1.8
PRE9YGR135W SSA3P09435 649 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W YOL162WP0CF19 215 aa3.79□□□□□ -1.8
PRE9YGR135W MGR1P25573 417 aa3.79□□□□□ -1.8
PRE9YGR135W MSK1P32048 576 aa3.79□□□□□ -1.8
PRE9YGR135W YPS1P32329 569 aa3.79□□□□□ -1.8
PRE9YGR135W ERG24P32462 438 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W SCM4P32564 187 aa3.79□□□□□ -1.8
PRE9YGR135W SPS19P32573 292 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W RAD23P32628 398 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W CPR5P35176 225 aa3.79□□□□□ -1.8
PRE9YGR135W DED81P38707 554 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W TVP23P38962 199 aa3.79□□□□□ -1.8
PRE9YGR135W PHO90P39535 881 aa3.79□□□□□ -1.8
PRE9YGR135W MMF1P40185 145 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W SLM1P40485 686 aa3.79□□□□□ -1.8
PRE9YGR135W LYS12P40495 371 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W LOC1P43586 204 aaPredicted RBP3.79□□□□□ -1.8
PRE9YGR135W NUP57P48837 541 aa3.79□□□□□ -1.8
PRE9YGR135W ERV14P53173 138 aa3.79□□□□□ -1.8
PRE9YGR135W VHT1P53241 593 aa3.79□□□□□ -1.8
PRE9YGR135W YNL234WP53857 426 aa3.79□□□□□ -1.8
PRE9YGR135W PIR1Q03178 341 aa3.79□□□□□ -1.8
PRE9YGR135W YMR315WQ04869 349 aaKnown RBP3.79□□□□□ -1.8
PRE9YGR135W COQ11Q05892 277 aa3.79□□□□□ -1.8
PRE9YGR135W PEX30Q06169 523 aa3.79□□□□□ -1.8
PRE9YGR135W YPD1Q07688 167 aa3.79□□□□□ -1.8
PRE9YGR135W RNH203Q12338 110 aa3.79□□□□□ -1.8
PRE9YGR135W YOR338WQ99326 363 aa3.79□□□□□ -1.8
PRE9YGR135W KIN28P06242 306 aa3.78□□□□□ -1.8
PRE9YGR135W ADK1P07170 222 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W COX9P07255 59 aa3.78□□□□□ -1.8
PRE9YGR135W DPM1P14020 267 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W RPB3P16370 318 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W GPI12P23797 304 aa3.78□□□□□ -1.8
PRE9YGR135W RPS2P25443 254 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W YCR100CP25606 316 aa3.78□□□□□ -1.8
PRE9YGR135W CLB6P32943 380 aa3.78□□□□□ -1.8
PRE9YGR135W ARC19P33204 171 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W DOA1P36037 715 aa3.78□□□□□ -1.8
PRE9YGR135W SDH4P37298 181 aa3.78□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms