RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SLC11A1P49279 550 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 KCNB1Q14721 858 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 BMT2Q1RMZ1 405 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 TIGD5Q53EQ6 642 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 CD302Q8IX05 232 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 POF1BQ8WVV4 589 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 POMGNT1Q8WZA1 660 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 IGSF21Q96ID5 467 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 SNX27Q96L92 541 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 CNTN3Q9P232 1028 aa28.1■■■□□ 2.09
TRIM28-204ENST00000594806 AGO2Q9UKV8 859 aaKnown RBP28.1■■■□□ 2.09
TRIM28-204ENST00000594806 CDH23Q9H251 3354 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 FAM189A1O60320 539 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 RHOBTB3O94955 611 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 SLC34A2O95436 690 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 LDHAP00338 332 aaKnown RBP28.09■■■□□ 2.09
TRIM28-204ENST00000594806 MAFAQ8NHW3 353 aaPredicted RBP28.09■■■□□ 2.09
TRIM28-204ENST00000594806 COLEC11Q9BWP8 271 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 RPF1Q9H9Y2 349 aaKnown RBP28.09■■■□□ 2.09
TRIM28-204ENST00000594806 SLC39A2Q9NP94 309 aa28.09■■■□□ 2.09
TRIM28-204ENST00000594806 CGNQ9P2M7 1197 aaKnown RBP28.09■■■□□ 2.09
TRIM28-204ENST00000594806 SMIM28A0A1B0GU29 152 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 NRP1O14786 923 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 KINO60870 393 aaKnown RBP28.08■■■□□ 2.09
TRIM28-204ENST00000594806 ADSSP30520 456 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 PBX3P40426 434 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 BMS1Q14692 1282 aaKnown RBP28.08■■■□□ 2.09
TRIM28-204ENST00000594806 SLC10A6Q3KNW5 377 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 SCFD1Q8WVM8 642 aa28.08■■■□□ 2.09
TRIM28-204ENST00000594806 PPP1R10Q96QC0 940 aaKnown RBP28.08■■■□□ 2.09
TRIM28-204ENST00000594806 CPSF3Q9UKF6 684 aaKnown RBP28.08■■■□□ 2.09
TRIM28-204ENST00000594806 TRANK1O15050 2925 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 B4GALT3O60512 393 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 GADD45BO75293 160 aaPredicted RBP28.07■■■□□ 2.08
TRIM28-204ENST00000594806 KIF20AO95235 890 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 ADRB2P07550 413 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 PRR29P0C7W0 189 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 OR1G1P47890 313 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 NAB2Q15742 525 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 DDX53Q86TM3 631 aaKnown RBP28.07■■■□□ 2.08
TRIM28-204ENST00000594806 GLIS3Q8NEA6 775 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 PPP2R3CQ969Q6 453 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 UROC1Q96N76 676 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 GBP4Q96PP9 640 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 GTPBP4Q9BZE4 634 aaKnown RBP28.07■■■□□ 2.08
TRIM28-204ENST00000594806 TLR9Q9NR96 1032 aa28.07■■■□□ 2.08
TRIM28-204ENST00000594806 PDCD11Q14690 1871 aaKnown RBP28.06■■■□□ 2.08
TRIM28-204ENST00000594806 MYO7AQ13402 2215 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 TTC26A0AVF1 554 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 NT5C1B-RDH14C9J2C7 533 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 SMC2O95347 1197 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 PPP2R3AQ06190 1150 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 STK4Q13043 487 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 CAMK1Q14012 370 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 HSP90AA2PQ14568 343 aaPredicted RBP28.06■■■□□ 2.08
TRIM28-204ENST00000594806 NSUN3Q9H649 340 aaKnown RBP28.06■■■□□ 2.08
TRIM28-204ENST00000594806 NGRNQ9NPE2 291 aaKnown RBP28.06■■■□□ 2.08
TRIM28-204ENST00000594806 RMND1Q9NWS8 449 aa28.06■■■□□ 2.08
TRIM28-204ENST00000594806 TISP43B9A030 160 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 PRPF40AO75400 957 aaKnown RBP28.05■■■□□ 2.08
TRIM28-204ENST00000594806 CXCL8P10145 99 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 HOXD13P35453 343 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 KNOP1Q1ED39 458 aaKnown RBP28.05■■■□□ 2.08
TRIM28-204ENST00000594806 SEZ6Q53EL9 994 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 ARMCX5Q6P1M9 558 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 HS2ST1Q7LGA3 356 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 GOLGA5Q8TBA6 731 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 DDX27Q96GQ7 796 aaKnown RBP28.05■■■□□ 2.08
TRIM28-204ENST00000594806 GSDMAQ96QA5 445 aa28.05■■■□□ 2.08
TRIM28-204ENST00000594806 XPOTO43592 962 aaKnown RBP28.04■■■□□ 2.08
TRIM28-204ENST00000594806 DNAJB1P25685 340 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 TNFSF9P41273 254 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 ENOX2Q16206 610 aaKnown RBP28.04■■■□□ 2.08
TRIM28-204ENST00000594806 GLRA4Q5JXX5 417 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 KIAA0895Q8NCT3 520 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 CXCL16Q9H2A7 254 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 IKZF4Q9H2S9 585 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 ASB7Q9H672 318 aa28.04■■■□□ 2.08
TRIM28-204ENST00000594806 FSCN2O14926 492 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 ACOT2P49753 483 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 PNOCQ13519 176 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 TMEM173Q86WV6 379 aaPredicted RBP28.03■■■□□ 2.08
TRIM28-204ENST00000594806 MICAL1Q8TDZ2 1067 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 ZMAT2Q96NC0 199 aaKnown RBP28.03■■■□□ 2.08
TRIM28-204ENST00000594806 KIAA1586Q9HCI6 787 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 MARCH5Q9NX47 278 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 PRG3Q9Y2Y8 225 aaPredicted RBP28.03■■■□□ 2.08
TRIM28-204ENST00000594806 DERAQ9Y315 318 aa28.03■■■□□ 2.08
TRIM28-204ENST00000594806 ATG2AQ2TAZ0 1938 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 MEFVO15553 781 aaPredicted RBP28.02■■■□□ 2.08
TRIM28-204ENST00000594806 TGFB1I1O43294 461 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 NCK2O43639 380 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 EXTL3O43909 919 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 CYP3A5P20815 502 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 RPL9P32969 192 aaKnown RBP28.02■■■□□ 2.08
TRIM28-204ENST00000594806 ZBTB41Q5SVQ8 909 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 C12orf56Q8IXR9 622 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 MICALL1Q8N3F8 863 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 SPATA20Q8TB22 786 aa28.02■■■□□ 2.08
TRIM28-204ENST00000594806 FSD2A1L4K1 749 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms