RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PTGESO14684 152 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 XPOTO43592 962 aaKnown RBP14.17□□□□□ -0.14
CLK3-224ENST00000568605 CLTAP09496 248 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 DNAJB1P25685 340 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 NDUFA8P51970 172 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 TPRNQ4KMQ1 711 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 GLRA4Q5JXX5 417 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 PLPP4Q5VZY2 271 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 KANK3Q6NY19 840 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 VPS52Q8N1B4 723 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 POMGNT1Q8WZA1 660 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 HLA-CQ95604 372 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 ZBTB45Q96K62 511 aaPredicted RBP14.17□□□□□ -0.14
CLK3-224ENST00000568605 CDCA3Q99618 268 aaPredicted RBP14.17□□□□□ -0.14
CLK3-224ENST00000568605 BLZF1Q9H2G9 400 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 PLEKHA5Q9HAU0 1116 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 EXOC1Q9NV70 894 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 MIOSQ9NXC5 875 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 CNTN3Q9P232 1028 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 SSX2IPQ9Y2D8 614 aa14.17□□□□□ -0.14
CLK3-224ENST00000568605 SF3B1O75533 1304 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-224ENST00000568605 DENND4AQ7Z401 1863 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 A0A0B4J269 797 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 FSCN2O14926 492 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 KIAA0391O15091 583 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 B4GALT3O60512 393 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 URODP06132 367 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 CXCL8P10145 99 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 MYBP10242 640 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 ELAVL2Q12926 359 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 CUL4BQ13620 913 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 CAMK1Q14012 370 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 HSP90AA2PQ14568 343 aaPredicted RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 TMEM173Q86WV6 379 aaPredicted RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 PABPC5Q96DU9 382 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 PAGE5Q96GU1 130 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 PPP1R10Q96QC0 940 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 TSPAN18Q96SJ8 248 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 HERC2P3Q9BVR0 1158 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 STRA6Q9BX79 667 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 ZBP1Q9H171 429 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 RPF1Q9H9Y2 349 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 MARCH5Q9NX47 278 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 HOOK1Q9UJC3 728 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 ADAM28Q9UKQ2 775 aa14.16□□□□□ -0.14
CLK3-224ENST00000568605 AGO2Q9UKV8 859 aaKnown RBP14.16□□□□□ -0.14
CLK3-224ENST00000568605 SMIM28A0A1B0GU29 152 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.15□□□□□ -0.14
CLK3-224ENST00000568605 CASTOR2A6NHX0 329 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 LDHAP00338 332 aaKnown RBP14.15□□□□□ -0.14
CLK3-224ENST00000568605 SOD2P04179 222 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 CTSAP10619 480 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 KCNE1P15382 129 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 GARTP22102 1010 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 IRS1P35568 1242 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 CASP5P51878 434 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 ERVFC1P60507 584 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 POU5F1Q01860 360 aaKnown RBP14.15□□□□□ -0.14
CLK3-224ENST00000568605 FAM160A1Q05DH4 1040 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 XKR4Q5GH76 650 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 SLC39A4Q6P5W5 647 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 KRBA2Q6ZNG9 492 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 CD302Q8IX05 232 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 ATXN2LQ8WWM7 1075 aaKnown RBP14.15□□□□□ -0.14
CLK3-224ENST00000568605 TLE6Q9H808 572 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 UBE2ZQ9H832 354 aaPredicted RBP14.15□□□□□ -0.14
CLK3-224ENST00000568605 CLDND1Q9NY35 253 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 STYXL1Q9Y6J8 313 aa14.15□□□□□ -0.14
CLK3-224ENST00000568605 ANKRD63C9JTQ0 380 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 TMEM189-UBE2V1I3L0A0 370 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 TADA2AO75478 443 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 PRPF6O94906 941 aaKnown RBP14.14□□□□□ -0.15
CLK3-224ENST00000568605 ZNF202O95125 648 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 NRIP1P48552 1158 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 GLUD2P49448 558 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 NDUFV1P49821 464 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 CREMQ03060 361 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 EHHADHQ08426 723 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 HYAL1Q12794 435 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 PSMD2Q13200 908 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 SEZ6Q53EL9 994 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 KIAA1841Q6NSI8 718 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 ARMCX5Q6P1M9 558 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 FUT10Q6P4F1 479 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 ALKAL1Q6UXT8 129 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 EP400NLQ6ZTU2 488 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 HS2ST1Q7LGA3 356 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 GRAMD1CQ8IYS0 662 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 BCL7CQ8WUZ0 217 aaPredicted RBP14.14□□□□□ -0.15
CLK3-224ENST00000568605 DDX27Q96GQ7 796 aaKnown RBP14.14□□□□□ -0.15
CLK3-224ENST00000568605 EMILIN2Q9BXX0 1053 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 HAPLN2Q9GZV7 340 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 GOLPH3LQ9H4A5 285 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 MRPL17Q9NRX2 175 aaKnown RBP14.14□□□□□ -0.15
CLK3-224ENST00000568605 UBQLN1Q9UMX0 589 aaKnown RBP14.14□□□□□ -0.15
CLK3-224ENST00000568605 IRAK3Q9Y616 596 aa14.14□□□□□ -0.15
CLK3-224ENST00000568605 PRUNE2Q8WUY3 3088 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 TTC26A0AVF1 554 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 TRAPPC3O43617 180 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms