RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 C1orf112Q9NSG2 853 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 HDAC6Q9UBN7 1215 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 NENFQ9UMX5 172 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 AP3M2P53677 418 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 NLRP11P59045 1033 aaKnown RBP18.16■□□□□ 0.5
LDLR-206ENST00000557958 GCNT1Q02742 428 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 DRP2Q13474 957 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 EFCAB12Q6NXP0 572 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 GLYCTKQ8IVS8 523 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 METTL13Q8N6R0 699 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 SLC30A5Q8TAD4 765 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 TAS1R2Q8TE23 839 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 C16orf70Q9BSU1 422 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 TCHPQ9BT92 498 aa18.16■□□□□ 0.5
LDLR-206ENST00000557958 MSCO60682 206 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 IGHA2P01877 340 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 TUBBP07437 444 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 C6orf222P0C671 652 aaPredicted RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 CYBAP13498 195 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 PRKAR2AP13861 404 aaKnown RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 TMOD1P28289 359 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 CCND3P30281 292 aaPredicted RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 ACOT2P49753 483 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 FAM71AQ8IYT1 594 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 SHC3Q92529 594 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 SEMA4DQ92854 862 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 CALR3Q96L12 384 aaKnown RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 AGPAT1Q99943 283 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 SYT11Q9BT88 431 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 PACSIN1Q9BY11 444 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 NFKBIZQ9BYH8 718 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 TOPORSQ9NS56 1045 aaPredicted RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 SEPT11Q9NVA2 429 aaKnown RBP18.15■□□□□ 0.5
LDLR-206ENST00000557958 SAGE1Q9NXZ1 904 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 SALL4Q9UJQ4 1053 aa18.15■□□□□ 0.5
LDLR-206ENST00000557958 C22orf31O95567 290 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 INSRRP14616 1297 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 USP8P40818 1118 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 PHKA2P46019 1235 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 CPT1AP50416 773 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 C1QTNF8P60827 252 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 POU5F1BQ06416 359 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 MKRN4PQ13434 485 aaPredicted RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 ARHGEF6Q15052 776 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 SURF1Q15526 300 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 ZACNQ401N2 412 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 C15orf39Q6ZRI6 1047 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 CTNNBL1Q8WYA6 563 aaPredicted RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 CGRRF1Q99675 332 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 ARID3AQ99856 593 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 PALMO75781 387 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 PGK1P00558 417 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 TMEM253P0C7T8 217 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 H2AFXP16104 143 aaPredicted RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 PIK3CAP42336 1068 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 NOP2P46087 812 aaKnown RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 BIRC3Q13489 604 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 TMEM132AQ24JP5 1023 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 SYCE1Q8N0S2 351 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 LNX1Q8TBB1 728 aaPredicted RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 HELQQ8TDG4 1101 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 ZBTB45Q96K62 511 aaPredicted RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 NLRP4Q96MN2 994 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 ACO2Q99798 780 aaKnown RBP18.14■□□□□ 0.49
LDLR-206ENST00000557958 RNF14Q9UBS8 474 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 TRIM17Q9Y577 477 aa18.14■□□□□ 0.49
LDLR-206ENST00000557958 A6NJR5 290 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 ACKR2O00590 384 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 OGTO15294 1046 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 PDE6CP51160 858 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 FSCN1Q16658 493 aaKnown RBP18.13■□□□□ 0.49
LDLR-206ENST00000557958 CCDC181Q5TID7 509 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 FBXO38Q6PIJ6 1188 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 CRELD2Q6UXH1 353 aaPredicted RBP18.13■□□□□ 0.49
LDLR-206ENST00000557958 OSBPL9Q96SU4 736 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 PDE11AQ9HCR9 933 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 PRDM4Q9UKN5 801 aa18.13■□□□□ 0.49
LDLR-206ENST00000557958 INO80B-WBP1J3KQ70 363 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 DUSP11O75319 330 aaKnown RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 RARBP10826 455 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 PAFAH1B1P43034 410 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 CLCN3P51790 818 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 PTENP60484 403 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 MCL1Q07820 350 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 DMTNQ08495 405 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 PRPF4BQ13523 1007 aaKnown RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 GNASQ5JWF2 1037 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 CCDC70Q6NSX1 233 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 MPZL3Q6UWV2 235 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 TSHZ1Q6ZSZ6 1077 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 BRSK2Q8IWQ3 736 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 RFFLQ8WZ73 363 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 ZNF668Q96K58 619 aaPredicted RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 CAPZA3Q96KX2 299 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 KREMEN1Q96MU8 473 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 IMPG2Q9BZV3 1241 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 INO80BQ9C086 356 aaPredicted RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 PRMT7Q9NVM4 692 aaPredicted RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 CENPFP49454 3210 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 ANKRD62A6NC57 917 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms