RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TDGF1	P13385	188 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	CD72	P21854	359 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	AKAP5	P24588	427 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	CCR3	P51677	355 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	MTAP	Q13126	283 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	CAPS	Q13938	189 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	RAB33A	Q14088	237 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	EPHA7	Q15375	998 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	XKR9	Q5GH70	373 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	BMP2KL	Q5H9B9	411 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	PPP4R3A	Q6IN85	833 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	TSSK4	Q6SA08	328 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	KRT25	Q7Z3Z0	450 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	PRIMPOL	Q96LW4	560 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	NAP1L4	Q99733	375 aa	Known RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLK	Q9H2G2	1235 aa	Predicted RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	MRPS23	Q9Y3D9	190 aa	Known RBP	13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	CACNA1I	Q9P0X4	2223 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079		A0A1B0GUA9	196 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	DGAT1	O75907	488 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	DEXI	O95424	95 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	SPEM2	Q0P670	501 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	FZD5	Q13467	585 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	FAM171A1	Q5VUB5	890 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	BLOC1S2	Q6QNY1	142 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	CEP57	Q86XR8	500 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	CHAMP1	Q96JM3	812 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	TRPV5	Q9NQA5	729 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	XPNPEP1	Q9NQW7	623 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	HEBP1	Q9NRV9	189 aa		13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	DNMT3B	Q9UBC3	853 aa	Known RBP	13.78	□□□□□ -0.2
CAPN1-223	ENST00000533079	TMEM189-UBE2V1	I3L0A0	370 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	NPTXR	O95502	500 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	TH	P07101	528 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	CNR2	P34972	360 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	EVC	P57679	992 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	CSRP2	Q16527	193 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	C1orf228	Q6PIY5	440 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	GPR179	Q6PRD1	2367 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	PPP4R3CP	Q6ZMV5	832 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	NEK8	Q86SG6	692 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZNF687	Q8N1G0	1237 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	HASPIN	Q8TF76	798 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	KCNB2	Q92953	911 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	MSANTD3	Q96H12	275 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	PAAF1	Q9BRP4	392 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	HCFC1R1	Q9NWW0	138 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	MTRR	Q9UBK8	725 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	PARP2	Q9UGN5	583 aa		13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.77	□□□□□ -0.21
CAPN1-223	ENST00000533079	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	CASTOR2	A6NHX0	329 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	EIF5B	O60841	1220 aa	Known RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	MICAL2	O94851	1124 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	LYPLA2	O95372	231 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	RHO	P08100	348 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	RPS6KB1	P23443	525 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	RBM25	P49756	843 aa	Known RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	SSRP1	Q08945	709 aa	Known RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	SPIRE1	Q08AE8	756 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	DMWD	Q09019	674 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	INF2	Q27J81	1249 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	PRR23C	Q6ZRP0	262 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	SLFN12	Q8IYM2	578 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	ING5	Q8WYH8	240 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	IRF7	Q92985	503 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	JAKMIP1	Q96N16	626 aa	Known RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	SEMA4G	Q9NTN9	838 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	KLK14	Q9P0G3	267 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	ANGPTL2	Q9UKU9	493 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	BACE2	Q9Y5Z0	518 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	USP24	Q9UPU5	2620 aa		13.76	□□□□□ -0.21
CAPN1-223	ENST00000533079	CCDC194	A0A1B0GVG4	234 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	SHISA7	A6NL88	538 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	PTGES	O14684	152 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	B4GALT5	O43286	388 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	PAPSS2	O95340	614 aa	Predicted RBP	13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	FGFR3	P22607	806 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	PDIA3	P30101	505 aa	Known RBP	13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	OR1D2	P34982	312 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	ARL2	P36404	184 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	MLLT6	P55198	1093 aa	Predicted RBP	13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	NAB2	Q15742	525 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	NPY5R	Q15761	445 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	NCAPH2	Q6IBW4	605 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	ANKS3	Q6ZW76	656 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	RABGGTA	Q92696	567 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	DYDC2	Q96IM9	177 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	CCDC43	Q96MW1	224 aa	Known RBP	13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	BRD9	Q9H8M2	597 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	ANKEF1	Q9NU02	776 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	RGL1	Q9NZL6	768 aa		13.75	□□□□□ -0.21
CAPN1-223	ENST00000533079	ARHGEF37	A1IGU5	675 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZNF197	O14709	1029 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	N4BP3	O15049	544 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms