RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 MCM7P33993 719 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 PRPF4BQ13523 1007 aaKnown RBP15.23■□□□□ 0.03
CXCL12-202ENST00000374426 LIN9Q5TKA1 542 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 DCLRE1AQ6PJP8 1040 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 PARM1Q6UWI2 310 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 NOSTRINQ8IVI9 506 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 NACC1Q96RE7 527 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 POLR3CQ9BUI4 534 aaPredicted RBP15.23■□□□□ 0.03
CXCL12-202ENST00000374426 CCDC113Q9H0I3 377 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 C2orf40Q9H1Z8 148 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 CDH7Q9ULB5 785 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 SIT1Q9Y3P8 196 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 R4GN57 208 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 NCOR2Q9Y618 2525 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 ACKR2O00590 384 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 CCL16O15467 120 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 PRKCBP05771 671 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 GLULP15104 373 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 CYP11B2P19099 503 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 IGFBP6P24592 240 aaPredicted RBP15.22■□□□□ 0.03
CXCL12-202ENST00000374426 HOXA9P31269 272 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 ID4P47928 161 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 GPC5P78333 572 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 ST3GAL1Q11201 340 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 TRIM29Q14134 588 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 MAPK6Q16659 721 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 PPM1LQ5SGD2 360 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 EEF1DP3Q658K8 133 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 PADI6Q6TGC4 694 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 PJA1Q8NG27 643 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 FGF13Q92913 245 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 FOXQ1Q9C009 403 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 SEMA4AQ9H3S1 761 aa15.22■□□□□ 0.03
CXCL12-202ENST00000374426 VWA8A3KMH1 1905 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 LMNAP02545 664 aaKnown RBP15.21■□□□□ 0.03
CXCL12-202ENST00000374426 LIG1P18858 919 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 RPA1P27694 616 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 NAMPTP43490 491 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 STARD6P59095 220 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 ELAVL2Q12926 359 aaKnown RBP15.21■□□□□ 0.03
CXCL12-202ENST00000374426 TMEM132AQ24JP5 1023 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 PDXDC1Q6P996 788 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 ERMP1Q7Z2K6 904 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 C1orf210Q8IVY1 113 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 ITFG1Q8TB96 612 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 SLC7A14Q8TBB6 771 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 KCNG4Q8TDN1 519 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 ADPGKQ9BRR6 497 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 KIFC3Q9BVG8 833 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 POLIQ9UNA4 740 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 GDAQ9Y2T3 454 aa15.21■□□□□ 0.03
CXCL12-202ENST00000374426 ARHGEF35A5YM69 484 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 TMEM189-UBE2V1I3L0A0 370 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 XYLBO75191 536 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 LRRN2O75325 713 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 POU2F2P09086 479 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 SP9P0CG40 484 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 FGFR3P22607 806 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 OR1D2P34982 312 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 GUCY1B3Q02153 619 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 RAB33AQ14088 237 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 GLRA4Q5JXX5 417 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 AXDND1Q5T1B0 1012 aaPredicted RBP15.2■□□□□ 0.02
CXCL12-202ENST00000374426 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.2■□□□□ 0.02
CXCL12-202ENST00000374426 DEPTORQ8TB45 409 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 PPP1R10Q96QC0 940 aaKnown RBP15.2■□□□□ 0.02
CXCL12-202ENST00000374426 POLD4Q9HCU8 107 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 HCFC1R1Q9NWW0 138 aa15.2■□□□□ 0.02
CXCL12-202ENST00000374426 MYH15Q9Y2K3 1946 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 COL4A3Q01955 1670 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 B3GAT3O94766 335 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 OR52Z1P0C646 297 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 RBM25P49756 843 aaKnown RBP15.19■□□□□ 0.02
CXCL12-202ENST00000374426 CLCNKBP51801 687 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 NEK4P51957 841 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 SNW1Q13573 536 aaKnown RBP15.19■□□□□ 0.02
CXCL12-202ENST00000374426 PPP2R5AQ15172 486 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 UVSSAQ2YD98 709 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 DCAF4L1Q3SXM0 396 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 NT5DC1Q5TFE4 455 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 CD300LGQ6UXG3 332 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 RSPO2Q6UXX9 243 aaPredicted RBP15.19■□□□□ 0.02
CXCL12-202ENST00000374426 MTSS1LQ765P7 747 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 MAML2Q8IZL2 1156 aaPredicted RBP15.19■□□□□ 0.02
CXCL12-202ENST00000374426 ERMNQ8TAM6 284 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 SHDQ96IW2 340 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 DDX23Q9BUQ8 820 aaKnown RBP15.19■□□□□ 0.02
CXCL12-202ENST00000374426 MTRRQ9UBK8 725 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 NOTCH4Q99466 2003 aa15.19■□□□□ 0.02
CXCL12-202ENST00000374426 FANCMQ8IYD8 2048 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 EFNA5P52803 228 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 SAFBQ15424 915 aaKnown RBP eCLIP15.18■□□□□ 0.02
CXCL12-202ENST00000374426 ZNF174Q15697 407 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 ECM1Q16610 540 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 UPP1Q16831 310 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 PABPC1LQ4VXU2 614 aaKnown RBP15.18■□□□□ 0.02
CXCL12-202ENST00000374426 ATF7IP2Q5U623 682 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 ZC3H14Q6PJT7 736 aaKnown RBP15.18■□□□□ 0.02
CXCL12-202ENST00000374426 NPAS3Q8IXF0 933 aa15.18■□□□□ 0.02
CXCL12-202ENST00000374426 C3orf58Q8NDZ4 430 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms