RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	YHL049C	P38722	271 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	KRE9	P39005	276 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	PRE6	P40303	254 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	YIA6	P40556	373 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YJL016W	P47072	561 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	NRM1	P53718	249 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YLR297W	Q05899	129 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	ECM7	Q06200	448 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	GMC2	Q06201	188 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YLR177W	Q06251	628 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	GPM3	Q12326	303 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	DFM1	Q12743	341 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	PUT1	P09368	476 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YAK1	P14680	807 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	DAL81	P21657	970 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	CAM1	P29547	415 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	ERG2	P32352	222 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	SMI1	P32566	505 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	GPX2	P38143	162 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	PRP24	P49960	444 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	NSA1	P53136	463 aa	Predicted RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	YGR026W	P53217	278 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	SUR7	P54003	302 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	ABF2	Q02486	183 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	TRM82	Q03774	444 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	API2	Q04413	109 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YDR124W	Q04608	324 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	YPL264C	Q08980	353 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	SAM4	Q08985	325 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	YDR018C	Q12185	396 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	TPO4	Q12256	659 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	SME1	Q12330	94 aa	Predicted RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	PAR32	Q12515	295 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	LAG2	Q92325	660 aa		0.72	□□□□□ -2.29
RKR1	YMR247C	IKI3	Q06706	1349 aa	Known RBP	0.72	□□□□□ -2.29
RKR1	YMR247C	SSC1	P0CS90	654 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	SEN2	P16658	377 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	CMK2	P22517	447 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YBR241C	P38142	488 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RCK2	P38623	610 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	HIS2	P38635	335 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YAP3	P38749	330 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MNN9	P39107	395 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	SHE4	P51534	789 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	UFD1	P53044	361 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MFG1	Q07684	458 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	TMC1	Q08422	150 aa	Predicted RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	ISN1	Q99312	450 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	GEA2	P39993	1459 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	NUP159	P40477	1460 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	SCO1	P23833	295 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MNE1	P24720	663 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	CHA1	P25379	360 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	ARO4	P32449	370 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	SCM4	P32564	187 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	ECM8	P38246	354 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MBA1	P38300	278 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	BIG1	P38813	335 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	SPL2	P38839	148 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	SUR2	P38992	349 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	DDI1	P40087	428 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RRG9	P40156	214 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	ASG7	P46993	209 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	CPR7	P47103	393 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	UBC13	P52490	153 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	PMT5	P52867	743 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RSC1	P53236	928 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	GTR2	P53290	341 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	PXR1	P53335	271 aa	Predicted RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	PRO2	P54885	456 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	RMI1	Q02685	241 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	SPO19	Q03029	223 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	EBS1	Q03466	884 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	ERV41	Q04651	352 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	ASA1	Q06822	443 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MMT2	Q08970	484 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YPL150W	Q12152	901 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	COX3	P00420	269 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RPS8A	P0CX39	200 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	RPS8B	P0CX40	200 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	MKK1	P32490	508 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	SSO1	P32867	290 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	HSM3	P38348	480 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RRT13	P40042	185 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YRB1	P41920	201 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	EGT2	P42835	1041 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	GCN20	P43535	752 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	AGX1	P43567	385 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	RPE1	P46969	238 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YJR056C	P47115	236 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	NUP84	P52891	726 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	CDH1	P53197	566 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	UTP6	Q02354	440 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	CWC21	Q03375	135 aa	Known RBP	0.71	□□□□□ -2.3
RKR1	YMR247C	YMR209C	Q03648	457 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	TIM22	Q12328	207 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	PRM7	Q12459	698 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	YOL085C	Q99345	113 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MYO1	P08964	1928 aa		0.71	□□□□□ -2.3
RKR1	YMR247C	MHP1	P43638	1398 aa		0.71	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 42.5 ms