RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	TRM10	Q12400	293 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	YAL067W-A	Q8TGK6	75 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	YMR316C-A	I2HB70	103 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	TPS2	P31688	896 aa	Known RBP	3.17	□□□□□ -1.9
CTK1	YKL139W	ALK2	P32789	676 aa	Predicted RBP	3.17	□□□□□ -1.9
CTK1	YKL139W	ZRT3	P34240	503 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	MRP21	P38175	177 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	KRE29	P40026	464 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	PRE5	P40302	234 aa	Known RBP	3.17	□□□□□ -1.9
CTK1	YKL139W	YFL064C	P43540	174 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	HOC1	P47124	396 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	YLR152C	P54072	576 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	UTP15	Q04305	513 aa	Known RBP	3.17	□□□□□ -1.9
CTK1	YKL139W	GTO3	Q04806	366 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	YPL119C-A	Q3E751	87 aa		3.17	□□□□□ -1.9
CTK1	YKL139W	RPO26	P20435	155 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	PPA2	P28239	310 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	JHD2	P47156	728 aa	Predicted RBP	3.16	□□□□□ -1.9
CTK1	YKL139W	HSH155	P49955	971 aa	Known RBP	3.16	□□□□□ -1.9
CTK1	YKL139W	PRP24	P49960	444 aa	Known RBP	3.16	□□□□□ -1.9
CTK1	YKL139W	ASI3	P53983	676 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	HAL1	Q01766	294 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	SCW10	Q04951	389 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	SPO77	Q06134	477 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	YAL063C-A	Q3E791	96 aa		3.16	□□□□□ -1.9
CTK1	YKL139W	CDC36	P06100	191 aa	Predicted RBP	3.15	□□□□□ -1.91
CTK1	YKL139W	RPL4A	P10664	362 aa	Known RBP	3.15	□□□□□ -1.91
CTK1	YKL139W	HOM6	P31116	359 aa	Known RBP	3.15	□□□□□ -1.91
CTK1	YKL139W	JEN1	P36035	616 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
CTK1	YKL139W	ECM34	P38728	170 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	RPL4B	P49626	362 aa	Known RBP	3.15	□□□□□ -1.91
CTK1	YKL139W	USE1	P53146	245 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	MRS2	Q01926	470 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	SDC1	Q03323	175 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	ARC18	Q05933	178 aa	Known RBP	3.15	□□□□□ -1.91
CTK1	YKL139W	AI5_BETA	Q9ZZX0	354 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	FLO11	P08640	1367 aa		3.15	□□□□□ -1.91
CTK1	YKL139W	NHP6B	P11633	99 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
CTK1	YKL139W	RPL24B	P24000	155 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	CAM1	P29547	415 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	VPH2	P32341	215 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	UTH1	P36135	365 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	MED8	P38304	223 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	THO1	P40040	218 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	YGL118C	P53132	145 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	LIF1	P53150	421 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	YGR018C	P53211	109 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	FMP41	P53889	259 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	CTF19	Q02732	369 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	MCH1	Q07376	486 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	DFM1	Q12743	341 aa	Known RBP	3.14	□□□□□ -1.91
CTK1	YKL139W	YOL085C	Q99345	113 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	PSK1	P31374	1356 aa		3.14	□□□□□ -1.91
CTK1	YKL139W	ADH1	P00330	348 aa	Known RBP	3.13	□□□□□ -1.91
CTK1	YKL139W	PBN1	P25580	416 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	EHD3	P28817	500 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	DBP7	P36120	742 aa	Known RBP	3.13	□□□□□ -1.91
CTK1	YKL139W	YBR096W	P38256	230 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	SIP3	P38717	1229 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	YJR079W	P47126	109 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	CGR1	P53188	120 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	TSA2	Q04120	196 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	ECM19	Q06011	112 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	YCT1	Q12235	531 aa		3.13	□□□□□ -1.91
CTK1	YKL139W	THP2	O13539	261 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	CBP6	P07253	162 aa	Predicted RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	COQ1	P18900	473 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	MRPL25	P23369	157 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	VMA6	P32366	345 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	CAT2	P32796	670 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	POP8	P38208	133 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	MIC12	P38341	106 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	EDC2	P40023	145 aa	Predicted RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	MIC19	P43594	170 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	RPC17	P47076	161 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	ZRG17	P53735	605 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	TLG1	Q03322	224 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	DCR2	Q05924	578 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	PLB3	Q08108	686 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	TIR4	Q12218	487 aa	Predicted RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	RPB9	P27999	122 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	VPS21	P36017	210 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	YHL049C	P38722	271 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	YIL054W	P40524	105 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	ACT1	P60010	375 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	PEX10	Q05568	337 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	YPR098C	Q06089	161 aa		3.12	□□□□□ -1.91
CTK1	YKL139W	RRS1	Q08746	203 aa	Known RBP	3.12	□□□□□ -1.91
CTK1	YKL139W	TPI1	P00942	248 aa	Known RBP	3.11	□□□□□ -1.91
CTK1	YKL139W	POX1	P13711	748 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	COX10	P21592	462 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	LDB16	P25587	256 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	YCR102C	P25608	368 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	RIB1	P38066	345 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	RTC3	P38804	111 aa	Predicted RBP	3.11	□□□□□ -1.91
CTK1	YKL139W	BNA7	Q04066	261 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	YDL144C	Q07589	356 aa		3.11	□□□□□ -1.91
CTK1	YKL139W	RFM1	Q12192	310 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms