RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	YML018C	Q03730	393 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	YMR155W	Q03795	547 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	YMR130W	Q04223	302 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	YMR315W	Q04869	349 aa	Known RBP	4.12	□□□□□ -1.75
PRP28	YDR243C	YMR034C	Q05131	434 aa	Predicted RBP	4.12	□□□□□ -1.75
PRP28	YDR243C	CNL1	Q06333	122 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	GPI11	Q06636	219 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	YLR413W	Q06689	675 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	MMT2	Q08970	484 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	FRE8	Q12209	686 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	RGT2	Q12300	763 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	ISA2	Q12425	185 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	AIM45	Q12480	344 aa	Known RBP	4.12	□□□□□ -1.75
PRP28	YDR243C	YCR075W-A	Q3E830	75 aa		4.12	□□□□□ -1.75
PRP28	YDR243C	SEC7	P11075	2009 aa	Known RBP	4.12	□□□□□ -1.75
PRP28	YDR243C	TPI1	P00942	248 aa	Known RBP	4.11	□□□□□ -1.75
PRP28	YDR243C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
PRP28	YDR243C	SEC22	P22214	214 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	RBK1	P25332	333 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	SFC1	P33303	322 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	MSN2	P33748	704 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	TMA19	P35691	167 aa	Known RBP	4.11	□□□□□ -1.75
PRP28	YDR243C	ADD66	P36040	267 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	YHL044W	P38727	235 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	HPA3	P39979	161 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	YER158C	P40095	573 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	LRO1	P40345	661 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	ATF1	P40353	525 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	FLX1	P40464	311 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	SPG5	P42933	373 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	YFL040W	P43562	540 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	RMD8	P43620	662 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	GCV1	P48015	400 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	OST3	P48439	350 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	PHB2	P50085	310 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	STR3	P53101	465 aa	Known RBP	4.11	□□□□□ -1.75
PRP28	YDR243C	SGF73	P53165	657 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	FMP41	P53889	259 aa	Known RBP	4.11	□□□□□ -1.75
PRP28	YDR243C	YDR132C	Q03900	495 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	DAL4	Q04895	635 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	YDR222W	Q04925	415 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	UPC2	Q12151	913 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	CTF3	Q12748	733 aa		4.11	□□□□□ -1.75
PRP28	YDR243C	THP2	O13539	261 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
PRP28	YDR243C	SNF5	P18480	905 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	SAG1	P20840	650 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	STE50	P25344	346 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	LSB5	P25369	354 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	URK1	P27515	501 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	AAR2	P32357	355 aa	Predicted RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	HOG1	P32485	435 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	MRPL11	P36521	249 aa	Predicted RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	ROT2	P38138	954 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	SAF1	P38352	637 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	SRP68	P38687	599 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	YAR028W	P39548	234 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	GCV3	P39726	170 aa	Predicted RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	RFC4	P40339	323 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	MOB1	P40484	314 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	ALK1	P43633	760 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	YJL132W	P47014	750 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	YGL138C	P53122	345 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	YGR066C	P53242	292 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	YNL260C	P53846	198 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	ATG4	P53867	494 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	ELC1	Q03071	99 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	PKR1	Q03880	122 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	PRM6	Q04705	352 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	HRD3	Q05787	833 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	PIN3	Q06449	215 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	JLP1	Q12358	412 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	YKL033W-A	Q86ZR7	236 aa		4.1	□□□□□ -1.75
PRP28	YDR243C	HRP1	Q99383	534 aa	Known RBP	4.1	□□□□□ -1.75
PRP28	YDR243C	SAL1	D6W196	494 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	GDH1	P07262	454 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	RPL27A	P0C2H6	136 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	RPL27B	P0C2H7	136 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	TIR1	P10863	254 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	AMD1	P15274	810 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	YCP4	P25349	247 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	ADH7	P25377	361 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	MSK1	P32048	576 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	ARO4	P32449	370 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	SEC17	P32602	292 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	TOS1	P38288	455 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	YEL057C	P39983	233 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	ATG18	P43601	500 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	CHA4	P43634	648 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	ZAP1	P47043	880 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	PET130	P47065	347 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	MPC1	P53157	130 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	SYF2	P53277	215 aa	Predicted RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	RHO4	Q00246	291 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	OAZ1	Q02803	292 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	UGO1	Q03327	502 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	CCE1	Q03702	353 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	YMR074C	Q04773	145 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	ADH6	Q04894	360 aa	Known RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	TPO3	Q06451	622 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms