RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 FGGP02679 453 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 CYP24A1Q07973 514 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 PRPF4BQ13523 1007 aaKnown RBP19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 TTMPQ5BVD1 217 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 MCPH1Q8NEM0 835 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 FAM76AQ8TAV0 307 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 TMC2Q8TDI7 906 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 CDHR1Q96JP9 859 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 CHORDC1Q9UHD1 332 aaPredicted RBP19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 ALG6Q9Y672 507 aa19.99■□□□□ 0.79
PRPF40B-208ENST00000548436 PTPRFP10586 1907 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 MFAP3P55082 362 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 GPC5P78333 572 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 FSTL1Q12841 308 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 PRKG1Q13976 671 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 TCEAL1Q15170 157 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 ALG3Q92685 438 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 PKNOX2Q96KN3 472 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 RUFY1Q96T51 708 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 CTTNBP2NLQ9P2B4 639 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 HNRNPDLO14979 420 aaKnown RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 MMEP08473 750 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 HIRAP54198 1017 aaPredicted RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 RTP1P59025 263 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 FMO1Q01740 532 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 LEKR1Q6ZMV7 388 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 EIF1ADQ8N9N8 165 aaKnown RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 FBXL13Q8NEE6 735 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 RNPC3Q96LT9 517 aaKnown RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 POLR3FQ9H1D9 316 aaPredicted RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 CARD9Q9H257 536 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 SLITRK6Q9H5Y7 841 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 ATP6V0A4Q9HBG4 840 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 RAB20Q9NX57 234 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 HOXC10Q9NYD6 342 aa19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 DIS3Q9Y2L1 958 aaKnown RBP19.98■□□□□ 0.79
PRPF40B-208ENST00000548436 ZNF233A6NK53 670 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 STAM2O75886 525 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 CLSTN1O94985 981 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 KRT14P02533 472 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 POU5F1Q01860 360 aaKnown RBP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 PPFIA1Q13136 1202 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 ZNF211Q13398 564 aaPredicted RBP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 CUL1Q13616 776 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 HLTFQ14527 1009 aaKnown RBP eCLIP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 GNPTABQ3T906 1256 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 MTERF2Q49AM1 385 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 BRDTQ58F21 947 aaPredicted RBP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 CFAP58Q5T655 872 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 NAA35Q5VZE5 725 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 SV2AQ7L0J3 742 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 GPD1LQ8N335 351 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 ZNF526Q8TF50 670 aaPredicted RBP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 FAM84AQ96KN4 292 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 CELF4Q9BZC1 486 aaKnown RBP19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 NEUROG2Q9H2A3 272 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 GPRC5DQ9NZD1 345 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 ARHGAP28Q9P2N2 729 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 CD2APQ9Y5K6 639 aa19.97■□□□□ 0.79
PRPF40B-208ENST00000548436 TTI1O43156 1089 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 PEX10O60683 326 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 RPS6KA5O75582 802 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 SUPT20HL2P0C7V6 817 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 DLATP10515 647 aaKnown RBP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 GZMAP12544 262 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 ATP4AP20648 1035 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 SUPT20HL1Q3ZLR7 823 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 NOL9Q5SY16 702 aaKnown RBP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 C11orf63Q6NUN7 778 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 MIS18BP1Q6P0N0 1132 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 TATDN2Q93075 761 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 NT5C1BQ96P26 610 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 ATMINO43313 823 aaPredicted RBP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 CYP11B1P15538 503 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 GARTP22102 1010 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 GTF2H1P32780 548 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 HSPA9P38646 679 aaKnown RBP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 XKR3Q5GH77 459 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 LRRC31Q6UY01 552 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 CYFIP1Q7L576 1253 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 DHX38Q92620 1227 aaKnown RBP19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 BICD1Q96G01 975 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 IFT74Q96LB3 600 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 FAM213AQ9BRX8 229 aa19.96■□□□□ 0.79
PRPF40B-208ENST00000548436 CNTN2Q02246 1040 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 AADACL2Q6P093 401 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 ADAT2Q7Z6V5 191 aaKnown RBP19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 CCDC26Q8TAB7 109 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 KRT35Q92764 455 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 SGIP1Q9BQI5 828 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 ERVK-5Q9HDB9 667 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 TMEM110-MUSTN1A8MSY1 372 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 DAPK3O43293 454 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 MARCKSL1P49006 195 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 MAATS1Q7Z4T9 603 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 DDX1Q92499 740 aaKnown RBP19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 ZNF516Q92618 1163 aa19.95■□□□□ 0.78
PRPF40B-208ENST00000548436 PI4K2AQ9BTU6 479 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms