RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YKL187C	P34231	750 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	IKI1	P38874	309 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	HAT2	P39984	401 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	COX15	P40086	486 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	TMA20	P89886	181 aa	Predicted RBP	4.83	□□□□□ -1.64
NUP1	YOR098C	PEX10	Q05568	337 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	RIM15	P43565	1770 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	ILV1	P00927	576 aa	Known RBP	4.83	□□□□□ -1.64
NUP1	YOR098C	GPX2	P38143	162 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	ARN1	P38731	627 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	AST2	P39945	430 aa	Known RBP	4.83	□□□□□ -1.64
NUP1	YOR098C	AVT6	P40074	448 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	NNT1	Q05874	261 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	BBP1	Q12365	385 aa		4.83	□□□□□ -1.64
NUP1	YOR098C	GCN3	P14741	305 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	YCR102C	P25608	368 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	TPS2	P31688	896 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	RCN1	P36054	211 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	ALG8	P40351	577 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	BET5	Q03630	159 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	YLR053C	Q12026	108 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	PER33	Q12144	273 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	MGT1	P26188	188 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	YKL063C	P35725	167 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	SMB1	P40018	196 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	DIM1	P41819	318 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	QRI1	P43123	477 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	YJL043W	P47053	257 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	MNN10	P50108	393 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	ERG13	P54839	491 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	STP1	Q00947	519 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	SGT1	Q08446	395 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	ATR1	P13090	542 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	HRR25	P29295	494 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	SIP2	P34164	415 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	MCR1	P36060	302 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	YBR241C	P38142	488 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	RPL10	P41805	221 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	GDS1	P41913	522 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	SNZ3	P43545	298 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	FMP32	P43557	207 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	ADO1	P47143	340 aa	Known RBP	4.82	□□□□□ -1.64
NUP1	YOR098C	PHO23	P50947	330 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	MGA1	P53050	456 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	MRM2	P53123	320 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	SNZ2	P53824	298 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	YML108W	Q03759	105 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	GIS1	Q03833	894 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	GPI17	Q04080	534 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	YMR027W	Q04371	470 aa		4.82	□□□□□ -1.64
NUP1	YOR098C	TEF1	P02994	458 aa	Known RBP	4.81	□□□□□ -1.64
NUP1	YOR098C	EXO70	P19658	623 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	YHR035W	P38769	630 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	YET2	Q04210	160 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	UIP4	Q08926	304 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	ACF2	Q12168	779 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	SAL1	D6W196	494 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	BI2	P03873	423 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	ITR2	P30606	609 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	FIG1	P38224	298 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	CDH1	P53197	566 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	MTM1	P53320	366 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	YRF1-3	P0CX14	1859 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	YRF1-7	P0CX15	1859 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	YRF1-6	P53819	1859 aa		4.81	□□□□□ -1.64
NUP1	YOR098C	NAM9	P27929	486 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	YPT35	P38815	214 aa	Known RBP	4.8	□□□□□ -1.64
NUP1	YOR098C	DHH1	P39517	506 aa	Known RBP	4.8	□□□□□ -1.64
NUP1	YOR098C	SOP4	P39543	234 aa	Predicted RBP	4.8	□□□□□ -1.64
NUP1	YOR098C	FRT2	P39734	528 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	MST27	P53176	234 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	YNR048W	P53740	393 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	CTF19	Q02732	369 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	RNY1	Q02933	434 aa	Known RBP	4.8	□□□□□ -1.64
NUP1	YOR098C	SWF1	Q04629	336 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	SEC10	Q06245	871 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
NUP1	YOR098C	POP7	P38291	140 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	MET30	P39014	640 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	FMP42	Q04991	504 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	GLO2	Q05584	274 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	PFA4	Q12006	378 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	HIS3	P06633	220 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	YEF1	P32622	495 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	GEP4	P38812	185 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	SRP14	P38985	146 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	ECL1	P48235	211 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
NUP1	YOR098C	YNL095C	P53932	642 aa		4.8	□□□□□ -1.64
NUP1	YOR098C	SNX3	Q08826	162 aa	Known RBP	4.8	□□□□□ -1.64
NUP1	YOR098C	MYO1	P08964	1928 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	COQ3	P27680	312 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	EHD3	P28817	500 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	CDC13	P32797	924 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	FRE2	P36033	711 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	YHK8	P38776	514 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	ICE2	P40499	491 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	FAR7	P43592	221 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	VMA10	P48836	114 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	COS1	P53822	381 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms