RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C ASP3-2P0CX77 362 aa1.81□□□□□ -2.12
UBP11YKR098C ASP3-3P0CX78 362 aa1.81□□□□□ -2.12
UBP11YKR098C ASP3-4P0CX79 362 aa1.81□□□□□ -2.12
UBP11YKR098C ASP3-1P0CZ17 362 aa1.81□□□□□ -2.12
UBP11YKR098C MRP1P10662 321 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C CDC42P19073 191 aa1.81□□□□□ -2.12
UBP11YKR098C ZIP1P31111 875 aa1.81□□□□□ -2.12
UBP11YKR098C SPS19P32573 292 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C CDC13P32797 924 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C FRM2P37261 193 aa1.81□□□□□ -2.12
UBP11YKR098C DED81P38707 554 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C YER085CP40058 173 aa1.81□□□□□ -2.12
UBP11YKR098C RRG9P40156 214 aa1.81□□□□□ -2.12
UBP11YKR098C LOA1Q06508 300 aa1.81□□□□□ -2.12
UBP11YKR098C PAM18Q07914 168 aa1.81□□□□□ -2.12
UBP11YKR098C MSH5Q12175 901 aa1.81□□□□□ -2.12
UBP11YKR098C FOL3Q12676 427 aaPredicted RBP1.81□□□□□ -2.12
UBP11YKR098C CFT1Q06632 1357 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C PCL1P24867 279 aa1.81□□□□□ -2.12
UBP11YKR098C YCR025CP25352 136 aa1.81□□□□□ -2.12
UBP11YKR098C MSN4P33749 630 aa1.81□□□□□ -2.12
UBP11YKR098C PRS2P38620 318 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C SER33P40510 469 aa1.81□□□□□ -2.12
UBP11YKR098C GCN20P43535 752 aaKnown RBP1.81□□□□□ -2.12
UBP11YKR098C NBP1P52919 319 aaPredicted RBP1.81□□□□□ -2.12
UBP11YKR098C YGL262WP53054 175 aa1.81□□□□□ -2.12
UBP11YKR098C VEL1P53058 206 aa1.81□□□□□ -2.12
UBP11YKR098C YGR018CP53211 109 aa1.81□□□□□ -2.12
UBP11YKR098C MAL13P53338 473 aa1.81□□□□□ -2.12
UBP11YKR098C HAL1Q01766 294 aa1.81□□□□□ -2.12
UBP11YKR098C INP1Q03694 420 aa1.81□□□□□ -2.12
UBP11YKR098C YML018CQ03730 393 aa1.81□□□□□ -2.12
UBP11YKR098C TAF9Q05027 157 aa1.81□□□□□ -2.12
UBP11YKR098C YLR283WQ05867 314 aa1.81□□□□□ -2.12
UBP11YKR098C CTR3Q06686 241 aa1.81□□□□□ -2.12
UBP11YKR098C PER33Q12144 273 aa1.81□□□□□ -2.12
UBP11YKR098C YOL085CQ99345 113 aa1.81□□□□□ -2.12
UBP11YKR098C YAL064W-BO13512 126 aa1.8□□□□□ -2.12
UBP11YKR098C ADH1P00330 348 aaKnown RBP1.8□□□□□ -2.12
UBP11YKR098C HSP26P15992 214 aaKnown RBP RIP-Chip data1.8□□□□□ -2.12not detected
UBP11YKR098C LDB16P25587 256 aa1.8□□□□□ -2.12
UBP11YKR098C YCR016WP25617 290 aaKnown RBP1.8□□□□□ -2.12
UBP11YKR098C MRX3P38172 270 aa1.8□□□□□ -2.12
UBP11YKR098C RRT13P40042 185 aa1.8□□□□□ -2.12
UBP11YKR098C ASG7P46993 209 aa1.8□□□□□ -2.12
UBP11YKR098C GLG2P47011 380 aa1.8□□□□□ -2.12
UBP11YKR098C NBP35P52920 328 aa1.8□□□□□ -2.12
UBP11YKR098C YOL029CQ08187 201 aa1.8□□□□□ -2.12
UBP11YKR098C SME1Q12330 94 aaPredicted RBP1.8□□□□□ -2.12
UBP11YKR098C YAL067W-AQ8TGK6 75 aa1.8□□□□□ -2.12
UBP11YKR098C CBP6P07253 162 aaPredicted RBP1.79□□□□□ -2.12
UBP11YKR098C EPT1P22140 391 aa1.79□□□□□ -2.12
UBP11YKR098C ATG15P25641 520 aa1.79□□□□□ -2.12
UBP11YKR098C NTG1P31378 399 aa1.79□□□□□ -2.12
UBP11YKR098C VPH2P32341 215 aa1.79□□□□□ -2.12
UBP11YKR098C BFR1P38934 470 aaKnown RBP RIP-Chip data1.79□□□□□ -2.12not detected
UBP11YKR098C SHC1P39000 512 aa1.79□□□□□ -2.12
UBP11YKR098C SMB1P40018 196 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C RTR1P40084 226 aaPredicted RBP1.79□□□□□ -2.12
UBP11YKR098C RPL10P41805 221 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C SWS2P53937 143 aa1.79□□□□□ -2.12
UBP11YKR098C VPS60Q03390 229 aa1.79□□□□□ -2.12
UBP11YKR098C MYO5Q04439 1219 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C ECM19Q06011 112 aa1.79□□□□□ -2.12
UBP11YKR098C SEC10Q06245 871 aa1.79□□□□□ -2.12
UBP11YKR098C YPL278CQ08990 100 aa1.79□□□□□ -2.12
UBP11YKR098C SGT2Q12118 346 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C TRM10Q12400 293 aa1.79□□□□□ -2.12
UBP11YKR098C TDH2P00358 332 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C TPI1P00942 248 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C PEX3P28795 441 aa1.79□□□□□ -2.12
UBP11YKR098C KRE6P32486 720 aa1.79□□□□□ -2.12
UBP11YKR098C YOX1P34161 385 aa1.79□□□□□ -2.12
UBP11YKR098C ZRT3P34240 503 aa1.79□□□□□ -2.12
UBP11YKR098C DBP7P36120 742 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C UTH1P36135 365 aa1.79□□□□□ -2.12
UBP11YKR098C MRPL3P36516 390 aa1.79□□□□□ -2.12
UBP11YKR098C DSN1P40568 576 aa1.79□□□□□ -2.12
UBP11YKR098C YFL064CP43540 174 aa1.79□□□□□ -2.12
UBP11YKR098C YJR012CP47087 207 aa1.79□□□□□ -2.12
UBP11YKR098C YPL113CQ02961 396 aa1.79□□□□□ -2.12
UBP11YKR098C SDC1Q03323 175 aa1.79□□□□□ -2.12
UBP11YKR098C CWC21Q03375 135 aaKnown RBP1.79□□□□□ -2.12
UBP11YKR098C YAL063C-AQ3E791 96 aa1.79□□□□□ -2.12
UBP11YKR098C YOS9Q99220 542 aa1.79□□□□□ -2.12
UBP11YKR098C MATALPHA1P0CY06 175 aa1.78□□□□□ -2.12
UBP11YKR098C HMLALPHA1P0CY07 175 aa1.78□□□□□ -2.12
UBP11YKR098C RPS5P26783 225 aaKnown RBP1.78□□□□□ -2.12
UBP11YKR098C QRI5P32344 111 aa1.78□□□□□ -2.12
UBP11YKR098C BMH2P34730 273 aaKnown RBP1.78□□□□□ -2.12
UBP11YKR098C LDB7P38210 180 aa1.78□□□□□ -2.12
UBP11YKR098C ECM34P38728 170 aa1.78□□□□□ -2.12
UBP11YKR098C SEN34P39707 275 aa1.78□□□□□ -2.12
UBP11YKR098C YER184CP39961 794 aa1.78□□□□□ -2.12
UBP11YKR098C AVT7P40501 490 aa1.78□□□□□ -2.12
UBP11YKR098C MSS2P40990 351 aa1.78□□□□□ -2.12
UBP11YKR098C LIF1P53150 421 aa1.78□□□□□ -2.12
UBP11YKR098C COG7P53195 279 aa1.78□□□□□ -2.12
UBP11YKR098C MRPL50P53724 139 aa1.78□□□□□ -2.12
UBP11YKR098C ACT1P60010 375 aaKnown RBP1.78□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 139.5 ms