RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 CCDC39Q9UFE4 941 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 PCDHA12Q9UN75 941 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 PCDHB12Q9Y5F1 795 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 IRAK3Q9Y616 596 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 COL4A2P08572 1712 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 MIA3Q5JRA6 1907 aa7.66□□□□□ -1.18
SPG11-224ENST00000561268 MEIS3P2A8K0S8 358 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 PI4K2BG5E9Z4 385 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 H3BQ06 376 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZBTB39O15060 712 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ASAP2O43150 1006 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CSDE1O75534 798 aaKnown RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 DGAT1O75907 488 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 PAPLNO95428 1278 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CAVIN2O95810 425 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 SKIP12755 728 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZSCAN20P17040 1043 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 PDCP20941 246 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 RPA1P27694 616 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 AXLP30530 894 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ARL2P36404 184 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CYP4A11Q02928 519 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 MBTD1Q05BQ5 628 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 DSC1Q08554 894 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 LAMTOR4Q0VGL1 99 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CAPSQ13938 189 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CTTNQ14247 550 aaKnown RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 MXD4Q14582 209 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 CBX2Q14781 532 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 AGMOQ6ZNB7 445 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 OTUD6AQ7L8S5 288 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 TMEM173Q86WV6 379 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 NOSTRINQ8IVI9 506 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 KSR1Q8IVT5 923 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ADHFE1Q8IWW8 467 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 C4orf32Q8N8J7 132 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 IGSF22Q8N9C0 903 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 PATJQ8NI35 1801 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 C8orf76Q96K31 380 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZNF668Q96K58 619 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 NLRP4Q96MN2 994 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZNF558Q96NG5 402 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 POLR3CQ9BUI4 534 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 C1QTNF1Q9BXJ1 281 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZBP1Q9H171 429 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ZDBF2Q9HCK1 2354 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 TBC1D13Q9NVG8 400 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 CNTNAP2Q9UHC6 1331 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 DBR1Q9UK59 544 aaKnown RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 PIN4Q9Y237 131 aaKnown RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 FAM50BQ9Y247 325 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 ARIH1Q9Y4X5 557 aaPredicted RBP7.65□□□□□ -1.18
SPG11-224ENST00000561268 PCDHGC5Q9Y5F6 944 aa7.65□□□□□ -1.18
SPG11-224ENST00000561268 NUP210Q8TEM1 1887 aaPredicted RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 TSPAN1O60635 241 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 GPR37L1O60883 481 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 MED24O75448 989 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 OR52Z1P0C646 297 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 GLRA2P23416 452 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 ERVFC1P60507 584 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 UBE2HP62256 183 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 TRIM29Q14134 588 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 FAM187BQ17R55 369 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 XKR9Q5GH70 373 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 TWF2Q6IBS0 349 aaKnown RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 CATSPER4Q7RTX7 472 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 CATSPER3Q86XQ3 398 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 GJD3Q8N144 294 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 RNF149Q8NC42 400 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 SMG8Q8ND04 991 aaKnown RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 GPT2Q8TD30 523 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 HELQQ8TDG4 1101 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 ASAP3Q8TDY4 903 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 BCL7CQ8WUZ0 217 aaPredicted RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 PRPF31Q8WWY3 499 aaKnown RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 TMEM143Q96AN5 459 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 SCLT1Q96NL6 688 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 VN1R3Q9BXE9 311 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 CCDC113Q9H0I3 377 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 NRDE2Q9H7Z3 1164 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 NGRNQ9NPE2 291 aaKnown RBP7.64□□□□□ -1.19
SPG11-224ENST00000561268 USP25Q9UHP3 1055 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 CD207Q9UJ71 328 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 LHX6Q9UPM6 363 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 ZKSCAN5Q9Y2L8 839 aa7.64□□□□□ -1.19
SPG11-224ENST00000561268 TRIOO75962 3097 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 SCN1AP35498 2009 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 PTPRDP23468 1912 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 LOC730098B7Z3J9 87 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 MCM7P33993 719 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 PBX3P40426 434 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 PRPHP41219 470 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 NRIP1P48552 1158 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 TOB1P50616 345 aaPredicted RBP7.63□□□□□ -1.19
SPG11-224ENST00000561268 BCAR1P56945 870 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 SAFBQ15424 915 aaKnown RBP eCLIP7.63□□□□□ -1.19
SPG11-224ENST00000561268 NOMO2Q5JPE7 1267 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 TTC38Q5R3I4 469 aa7.63□□□□□ -1.19
SPG11-224ENST00000561268 CAVIN1Q6NZI2 390 aaKnown RBP7.63□□□□□ -1.19
SPG11-224ENST00000561268 GLB1LQ6UWU2 654 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms