RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	LRRC63	Q05C16	580 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	KCNA1	Q09470	495 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	AMHR2	Q16671	573 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	DCAF4L1	Q3SXM0	396 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	PLEKHG4	Q58EX7	1191 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	ARMCX5	Q6P1M9	558 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	SLC27A1	Q6PCB7	646 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	MPZL3	Q6UWV2	235 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	HACE1	Q8IYU2	909 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	POMGNT1	Q8WZA1	660 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	CPB2	Q96IY4	423 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	ACO2	Q99798	780 aa	Known RBP	13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	CTNND2	Q9UQB3	1225 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	EVPL	Q92817	2033 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	MYH11	P35749	1972 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	TRIP12	Q14669	1992 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904		A0A1B0GUA9	196 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	EFCAB14	O75071	495 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	CAVIN2	O95810	425 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	CXCL10	P02778	98 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	SKI	P12755	728 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	ITGB8	P26012	769 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	RPL13	P26373	211 aa	Known RBP	13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	RAB27A	P51159	221 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	IKBKE	Q14164	716 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	TPD52L1	Q16890	204 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	CNKSR3	Q6P9H4	555 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	DBF4B	Q8NFT6	615 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	NELFB	Q8WX92	580 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	BAD	Q92934	168 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	P2RX5	Q93086	422 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	PDZD7	Q9H5P4	517 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	IL23A	Q9NPF7	189 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	AGPAT3	Q9NRZ7	376 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	RNF216	Q9NWF9	866 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZMYM2	Q9UBW7	1377 aa		13.69	□□□□□ -0.22
ABCD4-223	ENST00000555904	PPP1R3G	B7ZBB8	358 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	KIAA0391	O15091	583 aa	Known RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	HARS	P12081	509 aa	Known RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	CD44	P16070	742 aa	Known RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	CCNE1	P24864	410 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	ERCC5	P28715	1186 aa	Predicted RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	HOXA11	P31270	313 aa	Predicted RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	KYAT1	Q16773	422 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	EDRF1	Q3B7T1	1238 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	ANO6	Q4KMQ2	910 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	NOC3L	Q8WTT2	800 aa	Known RBP	13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	ADAM2	Q99965	735 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	MSTO1	Q9BUK6	570 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	KCTD10	Q9H3F6	313 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	C1orf112	Q9NSG2	853 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	RWDD2A	Q9UIY3	292 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	USP20	Q9Y2K6	914 aa		13.68	□□□□□ -0.22
ABCD4-223	ENST00000555904	BAIAP3	O94812	1187 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	NPTXR	O95502	500 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	FGFR1OP	O95684	399 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	LDHA	P00338	332 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	NR3C1	P04150	777 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	EDN1	P05305	212 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	MCF2	P10911	925 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	GART	P22102	1010 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	HOXD13	P35453	343 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	MCL1	Q07820	350 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	CENPP	Q6IPU0	288 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZBTB33	Q86T24	672 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	CDR2L	Q86X02	465 aa	Predicted RBP	13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	DNAJC25	Q9H1X3	360 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	MTIF3	Q9H2K0	278 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	TMX1	Q9H3N1	280 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	TSPY26P	Q9H489	355 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	AGO2	Q9UKV8	859 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	TRAF3IP3	Q9Y228	551 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904	SI	P14410	1827 aa		13.67	□□□□□ -0.22
ABCD4-223	ENST00000555904		A0A0B4J269	797 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	ABHD14A-ACY1	A0A1B0GW23	586 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	TTLL13P	A6NNM8	815 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	TISP43	B9A030	160 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	ANKRD63	C9JTQ0	380 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	TGFB1I1	O43294	461 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	EXOC3	O60645	756 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	PROZ	P22891	400 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	NR2F2	P24468	414 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	KCNJ6	P48051	423 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZNF165	P49910	485 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	CYP2J2	P51589	502 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	YARS	P54577	528 aa	Known RBP	13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	FKBP3	Q00688	224 aa	Known RBP	13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	GPNMB	Q14956	572 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	SLC39A4	Q6P5W5	647 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	FOXR2	Q6PJQ5	311 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	LRSAM1	Q6UWE0	723 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	SLC24A5	Q71RS6	500 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	C12orf56	Q8IXR9	622 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	CSGALNACT2	Q8N6G5	542 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	CBWD1	Q9BRT8	395 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	CCDC94	Q9BW85	323 aa	Predicted RBP	13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms