RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 AXLP30530 894 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 HOXA11P31270 313 aaPredicted RBP12.72□□□□□ -0.37
YBX3-213ENST00000542641 NOTUMQ6P988 496 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 SASS6Q6UVJ0 657 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 NELFCDQ8IXH7 590 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 CPB2Q96IY4 423 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 ACO2Q99798 780 aaKnown RBP12.72□□□□□ -0.37
YBX3-213ENST00000542641 TARS2Q9BW92 718 aaKnown RBP12.72□□□□□ -0.37
YBX3-213ENST00000542641 FTHL17Q9BXU8 183 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 TMX1Q9H3N1 280 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 IL23AQ9NPF7 189 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 CHST12Q9NRB3 414 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 A0A1B0GUA9 196 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 BMP6P22004 513 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 HOXD13P35453 343 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 PRCPP42785 496 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 LIG4P49917 911 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 MLLT1Q03111 559 aaPredicted RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 STIM1Q13586 685 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 IKBKEQ14164 716 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 KNOP1Q1ED39 458 aaKnown RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 BMT2Q1RMZ1 405 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 ATF7IP2Q5U623 682 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 ASTLQ6HA08 431 aaPredicted RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 TWF2Q6IBS0 349 aaKnown RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 CNKSR3Q6P9H4 555 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 ZPBP2Q6X784 338 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 FAM43BQ6ZT52 329 aaPredicted RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 GUF1Q8N442 669 aaKnown RBP12.71□□□□□ -0.37
YBX3-213ENST00000542641 VWCEQ96DN2 955 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 ADAM2Q99965 735 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 TCHPQ9BT92 498 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 TNFSF13BQ9Y275 285 aa12.71□□□□□ -0.37
YBX3-213ENST00000542641 MYH11P35749 1972 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 N4BP3O15049 544 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 TOM1L1O75674 476 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 PIGRP01833 764 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 FGBP02675 491 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 ACTN1P12814 892 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 PPP1R2P41236 205 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 MATR3P43243 847 aaKnown RBP eCLIP12.7□□□□□ -0.38
YBX3-213ENST00000542641 NLRP12P59046 1061 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 DSC3Q14574 896 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 TCTN1Q2MV58 587 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 COBLL1Q53SF7 1204 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 SLC27A1Q6PCB7 646 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 C16orf59Q7L2K0 433 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 CDR2LQ86X02 465 aaPredicted RBP12.7□□□□□ -0.38
YBX3-213ENST00000542641 ADSSL1Q8N142 457 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 ADPGKQ9BRR6 497 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 GBP3Q9H0R5 595 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 IKZF4Q9H2S9 585 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 PDZD7Q9H5P4 517 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 ANKFY1Q9P2R3 1169 aa12.7□□□□□ -0.38
YBX3-213ENST00000542641 ABHD14A-ACY1A0A1B0GW23 586 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 SYCE3A1L190 88 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 PPP1R3GB7ZBB8 358 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ANKRD63C9JTQ0 380 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 H0YGN5 161 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 STK25O00506 426 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ENPP3O14638 875 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 CLDN3O15551 220 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ATMINO43313 823 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 MGEA5O60502 916 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 MAGEA10P43363 369 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 EPHB4P54760 987 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ZSCAN23Q3MJ62 389 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ZNF568Q3ZCX4 644 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 EEF1DP3Q658K8 133 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 SLFN12LQ6IEE8 588 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 KLHL10Q6JEL2 608 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 SLC39A4Q6P5W5 647 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 PSRC1Q6PGN9 363 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 ZNF365Q70YC5 407 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 SLC24A5Q71RS6 500 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 HS2ST1Q7LGA3 356 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 OTOP2Q7RTS6 562 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 APBB1IPQ7Z5R6 666 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 ZBTB33Q86T24 672 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 RTN4RL1Q86UN2 441 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 MLKLQ8NB16 471 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 CCDC51Q96ER9 411 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 ZBTB45Q96K62 511 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 TRIM6Q9C030 488 aaPredicted RBP12.69□□□□□ -0.38
YBX3-213ENST00000542641 PTPRHQ9HD43 1115 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 RGS18Q9NS28 235 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 TANC1Q9C0D5 1861 aa12.69□□□□□ -0.38
YBX3-213ENST00000542641 SIP14410 1827 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 TISP43B9A030 160 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 PDXKO00764 312 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 PSMA7O14818 248 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 TGFB1I1O43294 461 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 EFCAB14O75071 495 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 NPTXRO95502 500 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 HARSP12081 509 aaKnown RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 IBSPP21815 317 aaPredicted RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 PROZP22891 400 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 SNRPFP62306 86 aaKnown RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 TYRO3Q06418 890 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 STX1AQ16623 288 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms