RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YGR266WP53326 701 aa1.4□□□□□ -2.19
RPF1YHR088W ARC18Q05933 178 aaKnown RBP1.4□□□□□ -2.19
RPF1YHR088W VPS68Q12016 184 aa1.4□□□□□ -2.19
RPF1YHR088W PRR2Q12310 699 aa1.4□□□□□ -2.19
RPF1YHR088W YAL063C-AQ3E791 96 aa1.4□□□□□ -2.19
RPF1YHR088W RPL26AP05743 127 aaKnown RBP1.39□□□□□ -2.19
RPF1YHR088W IFM1P25038 676 aa1.39□□□□□ -2.19
RPF1YHR088W MRPL6P32904 214 aa1.39□□□□□ -2.19
RPF1YHR088W GPX1P36014 167 aa1.39□□□□□ -2.19
RPF1YHR088W RXT2P38255 430 aa1.39□□□□□ -2.19
RPF1YHR088W YJR141WP47172 347 aaPredicted RBP1.39□□□□□ -2.19
RPF1YHR088W RPL26BP53221 127 aaKnown RBP1.39□□□□□ -2.19
RPF1YHR088W SPO24Q3E752 67 aa1.39□□□□□ -2.19
RPF1YHR088W LAG2Q92325 660 aa1.39□□□□□ -2.19
RPF1YHR088W HIS3P06633 220 aa1.38□□□□□ -2.19
RPF1YHR088W STE3P06783 470 aa1.38□□□□□ -2.19
RPF1YHR088W SCO1P23833 295 aa1.38□□□□□ -2.19
RPF1YHR088W VMA5P31412 392 aaKnown RBP1.38□□□□□ -2.19
RPF1YHR088W CAJ1P39101 391 aa1.38□□□□□ -2.19
RPF1YHR088W SYS1P41544 203 aa1.38□□□□□ -2.19
RPF1YHR088W YNL146WP53906 100 aa1.38□□□□□ -2.19
RPF1YHR088W DBP9Q06218 594 aaKnown RBP1.38□□□□□ -2.19
RPF1YHR088W YDL144CQ07589 356 aa1.38□□□□□ -2.19
RPF1YHR088W YDR262WQ12331 272 aa1.38□□□□□ -2.19
RPF1YHR088W ERD1P16151 362 aa1.37□□□□□ -2.19
RPF1YHR088W MRPL3P36516 390 aa1.37□□□□□ -2.19
RPF1YHR088W TRM7P38238 310 aaKnown RBP1.37□□□□□ -2.19
RPF1YHR088W INA22P40576 216 aa1.37□□□□□ -2.19
RPF1YHR088W MIG2P53035 382 aa1.37□□□□□ -2.19
RPF1YHR088W YGL114WP53134 725 aa1.37□□□□□ -2.19
RPF1YHR088W SSU72P53538 206 aaPredicted RBP1.37□□□□□ -2.19
RPF1YHR088W ALG9P53868 555 aaKnown RBP1.37□□□□□ -2.19
RPF1YHR088W YLR446WQ06204 433 aa1.37□□□□□ -2.19
RPF1YHR088W DCP1Q12517 231 aaPredicted RBP1.37□□□□□ -2.19
RPF1YHR088W YHR035WP38769 630 aa1.36□□□□□ -2.19
RPF1YHR088W AVT6P40074 448 aa1.36□□□□□ -2.19
RPF1YHR088W IRC4Q03036 179 aa1.36□□□□□ -2.19
RPF1YHR088W TVP15Q03860 143 aa1.36□□□□□ -2.19
RPF1YHR088W MYO5Q04439 1219 aaKnown RBP1.36□□□□□ -2.19
RPF1YHR088W SPO77Q06134 477 aa1.36□□□□□ -2.19
RPF1YHR088W RTC5Q12108 567 aaKnown RBP1.36□□□□□ -2.19
RPF1YHR088W ERP4Q12450 207 aa1.36□□□□□ -2.19
RPF1YHR088W FRE6Q12473 712 aa1.36□□□□□ -2.19
RPF1YHR088W MCH2P36032 473 aa1.35□□□□□ -2.19
RPF1YHR088W PRP24P49960 444 aaKnown RBP1.35□□□□□ -2.19
RPF1YHR088W BIO4P53630 237 aa1.35□□□□□ -2.19
RPF1YHR088W SNX41Q04053 625 aa1.35□□□□□ -2.19
RPF1YHR088W NNT1Q05874 261 aa1.35□□□□□ -2.19
RPF1YHR088W GAL7P08431 366 aa1.34□□□□□ -2.19
RPF1YHR088W RNR2P09938 399 aaKnown RBP1.34□□□□□ -2.19
RPF1YHR088W TAL1P15019 335 aaKnown RBP1.34□□□□□ -2.19
RPF1YHR088W CDC13P32797 924 aaKnown RBP1.34□□□□□ -2.19
RPF1YHR088W TPO5P36029 618 aa1.34□□□□□ -2.19
RPF1YHR088W PIR5P46999 287 aa1.34□□□□□ -2.19
RPF1YHR088W DAN1P47178 298 aa1.34□□□□□ -2.19
RPF1YHR088W BUR2Q05949 395 aa1.34□□□□□ -2.19
RPF1YHR088W UTP23Q12339 254 aaKnown RBP1.34□□□□□ -2.19
RPF1YHR088W AGC1Q12482 902 aa1.34□□□□□ -2.19
RPF1YHR088W DPM1P14020 267 aaKnown RBP1.33□□□□□ -2.2
RPF1YHR088W OSM1P21375 501 aaKnown RBP1.33□□□□□ -2.2
RPF1YHR088W MBA1P38300 278 aa1.33□□□□□ -2.2
RPF1YHR088W YHR045WP38775 560 aa1.33□□□□□ -2.2
RPF1YHR088W YIL012WP40551 113 aa1.33□□□□□ -2.2
RPF1YHR088W OST3P48439 350 aa1.33□□□□□ -2.2
RPF1YHR088W MND1P53102 219 aa1.33□□□□□ -2.2
RPF1YHR088W YGR168CP53293 376 aa1.33□□□□□ -2.2
RPF1YHR088W OKP1P53298 406 aa1.33□□□□□ -2.2
RPF1YHR088W YMR166CQ03829 368 aa1.33□□□□□ -2.2
RPF1YHR088W YPL278CQ08990 100 aa1.33□□□□□ -2.2
RPF1YHR088W TFS1P14306 219 aa1.32□□□□□ -2.2
RPF1YHR088W YCR025CP25352 136 aa1.32□□□□□ -2.2
RPF1YHR088W IMP1P28627 190 aa1.32□□□□□ -2.2
RPF1YHR088W LIN1P38852 340 aaPredicted RBP1.32□□□□□ -2.2
RPF1YHR088W VAB2P40003 282 aa1.32□□□□□ -2.2
RPF1YHR088W KRE29P40026 464 aa1.32□□□□□ -2.2
RPF1YHR088W YFR054CP43622 192 aa1.32□□□□□ -2.2
RPF1YHR088W YJR146WP47174 117 aa1.32□□□□□ -2.2
RPF1YHR088W UBC13P52490 153 aa1.32□□□□□ -2.2
RPF1YHR088W CUE3P53137 624 aaKnown RBP1.32□□□□□ -2.2
RPF1YHR088W PDR16P53860 351 aaKnown RBP1.32□□□□□ -2.2
RPF1YHR088W RCF1Q03713 159 aa1.32□□□□□ -2.2
RPF1YHR088W FCF1Q05498 189 aaPredicted RBP1.32□□□□□ -2.2
RPF1YHR088W DCR2Q05924 578 aa1.32□□□□□ -2.2
RPF1YHR088W SUE1Q06524 206 aa1.32□□□□□ -2.2
RPF1YHR088W RDS3Q06835 107 aaPredicted RBP1.32□□□□□ -2.2
RPF1YHR088W YLL007CQ07799 665 aa1.32□□□□□ -2.2
RPF1YHR088W POT1P27796 417 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2not detected
RPF1YHR088W YBR062CP38239 180 aa1.31□□□□□ -2.2
RPF1YHR088W SIF2P38262 535 aa1.31□□□□□ -2.2
RPF1YHR088W SUR2P38992 349 aa1.31□□□□□ -2.2
RPF1YHR088W MPP10P47083 593 aaKnown RBP1.31□□□□□ -2.2
RPF1YHR088W SWC4P53201 476 aa1.31□□□□□ -2.2
RPF1YHR088W CTS2Q06350 511 aa1.31□□□□□ -2.2
RPF1YHR088W ZRT1P32804 376 aa1.3□□□□□ -2.2
RPF1YHR088W IMP3P32899 183 aaPredicted RBP1.3□□□□□ -2.2
RPF1YHR088W LAS1P36146 502 aaPredicted RBP1.3□□□□□ -2.2
RPF1YHR088W SPL2P38839 148 aa1.3□□□□□ -2.2
RPF1YHR088W COG3P40094 801 aa1.3□□□□□ -2.2
RPF1YHR088W MRPL49P40858 161 aaPredicted RBP1.3□□□□□ -2.2
RPF1YHR088W ATG5Q12380 294 aa1.3□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 51.4 ms