RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W STD1Q02794 444 aa1.88□□□□□ -2.11
SIR4YDR227W YDR262WQ12331 272 aa1.88□□□□□ -2.11
SIR4YDR227W BRR2P32639 2163 aaKnown RBP1.88□□□□□ -2.11
SIR4YDR227W FAR1P21268 830 aa1.87□□□□□ -2.11
SIR4YDR227W MIR1P23641 311 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W PUB1P32588 453 aaKnown RBP RIP-Chip data1.87□□□□□ -2.11not detected
SIR4YDR227W YNK1P36010 153 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W OMA1P36163 345 aa1.87□□□□□ -2.11
SIR4YDR227W ATP3P38077 311 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W INA22P40576 216 aa1.87□□□□□ -2.11
SIR4YDR227W ALB1P47019 175 aaPredicted RBP1.87□□□□□ -2.11
SIR4YDR227W IKS1P47042 667 aa1.87□□□□□ -2.11
SIR4YDR227W YGL117WP53133 265 aa1.87□□□□□ -2.11
SIR4YDR227W MTL1P53214 551 aa1.87□□□□□ -2.11
SIR4YDR227W YGR127WP53275 312 aa1.87□□□□□ -2.11
SIR4YDR227W CUZ1P53899 274 aa1.87□□□□□ -2.11
SIR4YDR227W MAK3Q03503 176 aa1.87□□□□□ -2.11
SIR4YDR227W NUP53Q03790 475 aa1.87□□□□□ -2.11
SIR4YDR227W YDR124WQ04608 324 aa1.87□□□□□ -2.11
SIR4YDR227W YDR222WQ04925 415 aa1.87□□□□□ -2.11
SIR4YDR227W VAM6Q07468 1049 aa1.87□□□□□ -2.11
SIR4YDR227W MDM32Q12171 622 aa1.87□□□□□ -2.11
SIR4YDR227W TPO4Q12256 659 aa1.87□□□□□ -2.11
SIR4YDR227W YIR021W-AQ3E739 70 aa1.87□□□□□ -2.11
SIR4YDR227W SLO1Q3E784 85 aa1.87□□□□□ -2.11
SIR4YDR227W YGR035W-AQ45U48 73 aa1.87□□□□□ -2.11
SIR4YDR227W RPS31P05759 152 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W CTA1P15202 515 aa1.87□□□□□ -2.11
SIR4YDR227W EPT1P22140 391 aa1.87□□□□□ -2.11
SIR4YDR227W CDC50P25656 391 aa1.87□□□□□ -2.11
SIR4YDR227W TKL2P33315 681 aa1.87□□□□□ -2.11
SIR4YDR227W PPZ2P33329 710 aa1.87□□□□□ -2.11
SIR4YDR227W TIF3P34167 436 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W YNL320WP42840 284 aa1.87□□□□□ -2.11
SIR4YDR227W MRM2P53123 320 aa1.87□□□□□ -2.11
SIR4YDR227W PXR1P53335 271 aaPredicted RBP1.87□□□□□ -2.11
SIR4YDR227W ELP3Q02908 557 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W YMR160WQ03823 816 aa1.87□□□□□ -2.11
SIR4YDR227W YMR321CQ04898 105 aa1.87□□□□□ -2.11
SIR4YDR227W MCM21Q06675 368 aa1.87□□□□□ -2.11
SIR4YDR227W TPO1Q07824 586 aa1.87□□□□□ -2.11
SIR4YDR227W PAA1Q12447 191 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W ZPS1Q12512 249 aa1.87□□□□□ -2.11
SIR4YDR227W PEP4P07267 405 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W CPT1P17898 393 aa1.87□□□□□ -2.11
SIR4YDR227W AAT2P23542 418 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W CPR4P25334 318 aa1.87□□□□□ -2.11
SIR4YDR227W PRP21P32524 280 aaPredicted RBP1.87□□□□□ -2.11
SIR4YDR227W FRE1P32791 686 aa1.87□□□□□ -2.11
SIR4YDR227W SUI1P32911 108 aaKnown RBP1.87□□□□□ -2.11
SIR4YDR227W SPT10P35208 640 aa1.87□□□□□ -2.11
SIR4YDR227W YKL162CP36052 402 aa1.87□□□□□ -2.11
SIR4YDR227W SCO2P38072 301 aa1.87□□□□□ -2.11
SIR4YDR227W GRE3P38715 327 aaKnown RBP RIP-Chip data1.87□□□□□ -2.11not detected
SIR4YDR227W YIL169CP40442 995 aa1.87□□□□□ -2.11
SIR4YDR227W HOC1P47124 396 aa1.87□□□□□ -2.11
SIR4YDR227W MUP1P50276 574 aa1.87□□□□□ -2.11
SIR4YDR227W TRM112P53738 135 aaPredicted RBP1.87□□□□□ -2.11
SIR4YDR227W VHS1Q03785 461 aa1.87□□□□□ -2.11
SIR4YDR227W YLR283WQ05867 314 aa1.87□□□□□ -2.11
SIR4YDR227W SKI7Q08491 747 aaPredicted RBP1.87□□□□□ -2.11
SIR4YDR227W FRE8Q12209 686 aa1.87□□□□□ -2.11
SIR4YDR227W ISN1Q99312 450 aa1.87□□□□□ -2.11
SIR4YDR227W FAB1P34756 2278 aa1.87□□□□□ -2.11
SIR4YDR227W FEN2P25621 512 aaKnown RBP1.86□□□□□ -2.11
SIR4YDR227W NDI1P32340 513 aa1.86□□□□□ -2.11
SIR4YDR227W NPL6P32832 435 aa1.86□□□□□ -2.11
SIR4YDR227W YJL043WP47053 257 aa1.86□□□□□ -2.11
SIR4YDR227W YJR056CP47115 236 aa1.86□□□□□ -2.11
SIR4YDR227W BUL1P48524 976 aa1.86□□□□□ -2.11
SIR4YDR227W ORC5P50874 479 aa1.86□□□□□ -2.11
SIR4YDR227W SUN4P53616 420 aa1.86□□□□□ -2.11
SIR4YDR227W CAC2Q04199 468 aa1.86□□□□□ -2.11
SIR4YDR227W SOV1Q04748 898 aa1.86□□□□□ -2.11
SIR4YDR227W YPR127WQ06494 345 aa1.86□□□□□ -2.11
SIR4YDR227W RRG7Q08774 242 aaPredicted RBP1.86□□□□□ -2.11
SIR4YDR227W ATG9Q12142 997 aa1.86□□□□□ -2.11
SIR4YDR227W SKS1Q12505 502 aa1.86□□□□□ -2.11
SIR4YDR227W LAA1P39526 2014 aa1.86□□□□□ -2.11
SIR4YDR227W YER130CP39959 443 aa1.86□□□□□ -2.11
SIR4YDR227W DDI1P40087 428 aa1.86□□□□□ -2.11
SIR4YDR227W NDC80P40460 691 aa1.86□□□□□ -2.11
SIR4YDR227W OTU1P43558 301 aa1.86□□□□□ -2.11
SIR4YDR227W AAD10P47182 288 aa1.86□□□□□ -2.11
SIR4YDR227W STR3P53101 465 aaKnown RBP1.86□□□□□ -2.11
SIR4YDR227W ORM1P53224 222 aa1.86□□□□□ -2.11
SIR4YDR227W DIA1P54005 336 aa1.86□□□□□ -2.11
SIR4YDR227W REC102Q02721 264 aa1.86□□□□□ -2.11
SIR4YDR227W SKI8Q02793 397 aaPredicted RBP1.86□□□□□ -2.11
SIR4YDR227W YLR012CQ07927 99 aa1.86□□□□□ -2.11
SIR4YDR227W MCA1Q08601 432 aa1.86□□□□□ -2.11
SIR4YDR227W IRC13Q08630 104 aa1.86□□□□□ -2.11
SIR4YDR227W UAF30Q08747 228 aa1.86□□□□□ -2.11
SIR4YDR227W USV1Q12132 391 aa1.86□□□□□ -2.11
SIR4YDR227W YLR126CQ12288 251 aa1.86□□□□□ -2.11
SIR4YDR227W YOS9Q99220 542 aa1.86□□□□□ -2.11
SIR4YDR227W AAC1P04710 309 aa1.86□□□□□ -2.11
SIR4YDR227W GCY1P14065 312 aaKnown RBP RIP-Chip data1.86□□□□□ -2.11not detected
SIR4YDR227W TFS1P14306 219 aa1.86□□□□□ -2.11
SIR4YDR227W TAH1P25638 111 aaPredicted RBP1.86□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms