RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	CDC13	P32797	924 aa	Known RBP	0.87	□□□□□ -2.27
VAR1	Q0140	GPX1	P36014	167 aa		0.87	□□□□□ -2.27
VAR1	Q0140	YOR062C	P36025	268 aa		0.87	□□□□□ -2.27
VAR1	Q0140	MRPL49	P40858	161 aa	Predicted RBP	0.87	□□□□□ -2.27
VAR1	Q0140	YJL055W	P47044	245 aa		0.87	□□□□□ -2.27
VAR1	Q0140	OST3	P48439	350 aa		0.87	□□□□□ -2.27
VAR1	Q0140	YNR068C	P53754	272 aa		0.87	□□□□□ -2.27
VAR1	Q0140	FCF1	Q05498	189 aa	Predicted RBP	0.87	□□□□□ -2.27
VAR1	Q0140	INM2	Q05533	292 aa		0.87	□□□□□ -2.27
VAR1	Q0140	YLR012C	Q07927	99 aa		0.87	□□□□□ -2.27
VAR1	Q0140	GAL7	P08431	366 aa		0.86	□□□□□ -2.27
VAR1	Q0140	ERD1	P16151	362 aa		0.86	□□□□□ -2.27
VAR1	Q0140	RBK1	P25332	333 aa		0.86	□□□□□ -2.27
VAR1	Q0140	MYO3	P36006	1272 aa		0.86	□□□□□ -2.27
VAR1	Q0140	SPL2	P38839	148 aa		0.86	□□□□□ -2.27
VAR1	Q0140	HSP82	P02829	709 aa	Known RBP	0.85	□□□□□ -2.27
VAR1	Q0140	CIN8	P27895	1000 aa		0.85	□□□□□ -2.27
VAR1	Q0140	FAA1	P30624	700 aa	Known RBP	0.85	□□□□□ -2.27
VAR1	Q0140	GCG1	P32656	232 aa	Known RBP	0.85	□□□□□ -2.27
VAR1	Q0140	COG3	P40094	801 aa		0.85	□□□□□ -2.27
VAR1	Q0140	AYR1	P40471	297 aa		0.85	□□□□□ -2.27
VAR1	Q0140	UTP25	P40498	721 aa	Known RBP	0.85	□□□□□ -2.27
VAR1	Q0140	PRP24	P49960	444 aa	Known RBP	0.85	□□□□□ -2.27
VAR1	Q0140	SUR2	P38992	349 aa		0.84	□□□□□ -2.27
VAR1	Q0140	AVT6	P40074	448 aa		0.84	□□□□□ -2.27
VAR1	Q0140	YDL144C	Q07589	356 aa		0.84	□□□□□ -2.27
VAR1	Q0140	YOR268C	Q08734	132 aa		0.84	□□□□□ -2.27
VAR1	Q0140	RPL6B	P05739	176 aa	Known RBP	0.83	□□□□□ -2.28
VAR1	Q0140	YCR102C	P25608	368 aa		0.83	□□□□□ -2.28
VAR1	Q0140	MRPL3	P36516	390 aa		0.83	□□□□□ -2.28
VAR1	Q0140	PXR1	P53335	271 aa	Predicted RBP	0.83	□□□□□ -2.28
VAR1	Q0140	RPL6A	Q02326	176 aa	Known RBP	0.83	□□□□□ -2.28
VAR1	Q0140	YPL247C	Q12523	523 aa		0.83	□□□□□ -2.28
VAR1	Q0140	RAD10	P06838	210 aa		0.82	□□□□□ -2.28
VAR1	Q0140	UBA1	P22515	1024 aa	Known RBP	0.82	□□□□□ -2.28
VAR1	Q0140	YCR025C	P25352	136 aa		0.82	□□□□□ -2.28
VAR1	Q0140	IMP1	P28627	190 aa		0.82	□□□□□ -2.28
VAR1	Q0140	PUP2	P32379	260 aa		0.82	□□□□□ -2.28
VAR1	Q0140	MDL1	P33310	695 aa		0.82	□□□□□ -2.28
VAR1	Q0140	SOP4	P39543	234 aa	Predicted RBP	0.82	□□□□□ -2.28
VAR1	Q0140	YIL089W	P40500	205 aa		0.82	□□□□□ -2.28
VAR1	Q0140	TPN1	P53099	579 aa		0.82	□□□□□ -2.28
VAR1	Q0140	VPS9	P54787	451 aa		0.82	□□□□□ -2.28
VAR1	Q0140	UTP6	Q02354	440 aa	Known RBP	0.82	□□□□□ -2.28
VAR1	Q0140	ATG5	Q12380	294 aa		0.82	□□□□□ -2.28
VAR1	Q0140	LAG2	Q92325	660 aa		0.82	□□□□□ -2.28
VAR1	Q0140	RGS2	Q99188	309 aa		0.82	□□□□□ -2.28
VAR1	Q0140	GDT1	P38301	280 aa	Predicted RBP	0.81	□□□□□ -2.28
VAR1	Q0140	YML6	P51998	286 aa		0.81	□□□□□ -2.28
VAR1	Q0140	TAF6	P53040	516 aa		0.81	□□□□□ -2.28
VAR1	Q0140	TFB5	Q3E7C1	72 aa	Predicted RBP	0.81	□□□□□ -2.28
VAR1	Q0140	PAN1	P32521	1480 aa		0.8	□□□□□ -2.28
VAR1	Q0140	YLL053C	P0CD98	152 aa		0.8	□□□□□ -2.28
VAR1	Q0140	PXA2	P34230	853 aa		0.8	□□□□□ -2.28
VAR1	Q0140	YBR062C	P38239	180 aa		0.8	□□□□□ -2.28
VAR1	Q0140	YHL026C	P38740	315 aa		0.8	□□□□□ -2.28
VAR1	Q0140	BTT1	P40314	149 aa	Predicted RBP	0.8	□□□□□ -2.28
VAR1	Q0140	YJL016W	P47072	561 aa		0.8	□□□□□ -2.28
VAR1	Q0140	CAB4	P53332	305 aa		0.8	□□□□□ -2.28
VAR1	Q0140	RDS1	P25611	832 aa		0.79	□□□□□ -2.28
VAR1	Q0140	YLL007C	Q07799	665 aa		0.79	□□□□□ -2.28
VAR1	Q0140	NUP157	P40064	1391 aa	Known RBP	0.79	□□□□□ -2.28
VAR1	Q0140	HXT2	P23585	541 aa		0.78	□□□□□ -2.28
VAR1	Q0140	ATG15	P25641	520 aa		0.78	□□□□□ -2.28
VAR1	Q0140	NUP57	P48837	541 aa		0.78	□□□□□ -2.28
VAR1	Q0140	SWT21	P53873	357 aa	Predicted RBP	0.78	□□□□□ -2.28
VAR1	Q0140	PAR32	Q12515	295 aa	Known RBP	0.78	□□□□□ -2.28
VAR1	Q0140	MNE1	P24720	663 aa		0.77	□□□□□ -2.29
VAR1	Q0140	IFM1	P25038	676 aa		0.77	□□□□□ -2.29
VAR1	Q0140	RPL16B	P26785	198 aa	Known RBP	0.77	□□□□□ -2.29
VAR1	Q0140	KRE29	P40026	464 aa		0.77	□□□□□ -2.29
VAR1	Q0140	RSC1	P53236	928 aa		0.77	□□□□□ -2.29
VAR1	Q0140	YLR446W	Q06204	433 aa		0.77	□□□□□ -2.29
VAR1	Q0140	OSM1	P21375	501 aa	Known RBP	0.76	□□□□□ -2.29
VAR1	Q0140	ACB1	P31787	87 aa		0.76	□□□□□ -2.29
VAR1	Q0140	DOA4	P32571	926 aa		0.76	□□□□□ -2.29
VAR1	Q0140	YDR089W	P38966	869 aa		0.76	□□□□□ -2.29
VAR1	Q0140	RPL10	P41805	221 aa	Known RBP	0.76	□□□□□ -2.29
VAR1	Q0140	YGR016W	P53209	190 aa		0.76	□□□□□ -2.29
VAR1	Q0140	YOL162W	P0CF19	215 aa		0.75	□□□□□ -2.29
VAR1	Q0140	YSW1	P38280	609 aa		0.75	□□□□□ -2.29
VAR1	Q0140	SXM1	Q04175	944 aa	Known RBP	0.75	□□□□□ -2.29
VAR1	Q0140	ISD11	Q6Q560	94 aa		0.75	□□□□□ -2.29
VAR1	Q0140	TPO5	P36029	618 aa		0.74	□□□□□ -2.29
VAR1	Q0140	DSE2	P38844	325 aa		0.74	□□□□□ -2.29
VAR1	Q0140	GDI1	P39958	451 aa	Known RBP	0.74	□□□□□ -2.29
VAR1	Q0140	YER135C	P40082	130 aa		0.74	□□□□□ -2.29
VAR1	Q0140	MRS2	Q01926	470 aa		0.74	□□□□□ -2.29
VAR1	Q0140	SNX41	Q04053	625 aa		0.74	□□□□□ -2.29
VAR1	Q0140	CDC7	P06243	507 aa		0.73	□□□□□ -2.29
VAR1	Q0140	TOM40	P23644	387 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	VMA5	P31412	392 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	VMA8	P32610	256 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	ALP1	P38971	573 aa		0.73	□□□□□ -2.29
VAR1	Q0140	PRP39	P39682	629 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	RPA34	P47006	233 aa	Predicted RBP	0.73	□□□□□ -2.29
VAR1	Q0140	YJL118W	P47022	219 aa		0.73	□□□□□ -2.29
VAR1	Q0140	SUB1	P54000	292 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	RVB1	Q03940	463 aa	Known RBP	0.73	□□□□□ -2.29
VAR1	Q0140	UBR2	Q07963	1872 aa		0.72	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms